Variant report

Variant	rs13225542
Chromosome Location	chr7:16106069-16106070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1034958	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950599	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11769952	0.80[EUR][1000 genomes]
rs1528137	0.90[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs1528148	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1881241	0.80[EUR][1000 genomes]
rs2056419	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2056420	0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs56064186	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6461221	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6945278	0.83[EUR][1000 genomes]
rs6945873	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6965576	0.82[EUR][1000 genomes]
rs875127	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs969610	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16096000-16106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:16099200-16106600	Enhancers	Fetal Lung	lung
3	chr7:16101000-16106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:16102000-16113200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:16102200-16107000	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:16102800-16106200	Weak transcription	Liver	Liver
7	chr7:16103600-16114800	Weak transcription	Fetal Heart	heart
8	chr7:16103800-16106200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:16103800-16106200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:16103800-16106200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:16103800-16106400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:16103800-16106600	Weak transcription	Fetal Kidney	kidney
13	chr7:16103800-16106800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:16103800-16106800	Weak transcription	Ovary	ovary
15	chr7:16104000-16106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:16104000-16106200	Weak transcription	Right Atrium	heart
17	chr7:16104200-16106200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:16104200-16106600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr7:16104200-16106800	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:16104200-16107200	Weak transcription	Psoas Muscle	Psoas
21	chr7:16104200-16107400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:16104200-16108000	Weak transcription	Left Ventricle	heart
23	chr7:16104400-16106200	Weak transcription	Adipose Nuclei	Adipose
24	chr7:16105000-16106600	Enhancers	NHDF-Ad	bronchial
25	chr7:16105200-16106800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:16105200-16107600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:16105400-16108000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:16105600-16106200	Weak transcription	Brain Anterior Caudate	brain
29	chr7:16105800-16107000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr7:16105800-16107200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:16105800-16107800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr7:16105800-16107800	Enhancers	HUVEC	blood vessel
33	chr7:16105800-16108000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:16106000-16106200	Enhancers	Stomach Mucosa	stomach
35	chr7:16106000-16106400	Weak transcription	Fetal Stomach	stomach
36	chr7:16106000-16107200	Enhancers	Primary T cells from cord blood	blood
37	chr7:16106000-16107400	Enhancers	Stomach Smooth Muscle	stomach
38	chr7:16106000-16107600	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr7:16106000-16107800	Enhancers	Osteobl	bone

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