Variant report

Variant	rs1528148
Chromosome Location	chr7:16107411-16107412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16097119..16099277-chr7:16107304..16109776,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1034958	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10950599	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13225542	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1528137	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1918859	0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2056419	0.89[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2056420	0.90[CHB][hapmap];0.81[AMR][1000 genomes]
rs6461221	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6945278	0.81[EUR][1000 genomes]
rs6945873	0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs7798339	0.84[AMR][1000 genomes]
rs875127	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs969610	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16102000-16113200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:16103600-16114800	Weak transcription	Fetal Heart	heart
3	chr7:16104200-16108000	Weak transcription	Left Ventricle	heart
4	chr7:16105200-16107600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:16105400-16108000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:16105800-16107800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:16105800-16107800	Enhancers	HUVEC	blood vessel
8	chr7:16105800-16108000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:16106000-16107600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr7:16106000-16107800	Enhancers	Osteobl	bone
11	chr7:16106200-16107600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr7:16106200-16107600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:16106200-16107800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:16106200-16107800	Active TSS	Right Atrium	heart
15	chr7:16106200-16108000	Enhancers	Liver	Liver
16	chr7:16106200-16108000	Enhancers	Brain Germinal Matrix	brain
17	chr7:16106200-16108200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:16106200-16108200	Enhancers	Adipose Nuclei	Adipose
19	chr7:16106200-16108400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:16106400-16107600	Active TSS	Brain Anterior Caudate	brain
21	chr7:16106400-16107800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:16106400-16107800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:16106400-16108000	Enhancers	Fetal Stomach	stomach
24	chr7:16106600-16107600	Active TSS	Brain Angular Gyrus	brain
25	chr7:16106600-16107600	Enhancers	NHLF	lung
26	chr7:16106600-16107800	Enhancers	HSMM	muscle
27	chr7:16106600-16108000	Enhancers	Brain Substantia Nigra	brain
28	chr7:16106600-16108000	Enhancers	HSMMtube	muscle
29	chr7:16106800-16107600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr7:16106800-16107600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr7:16106800-16107600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr7:16106800-16108200	Enhancers	Fetal Muscle Leg	muscle
33	chr7:16106800-16108200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr7:16107000-16107600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr7:16107000-16107800	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr7:16107000-16108000	Enhancers	Brain Cingulate Gyrus	brain
37	chr7:16107000-16108000	Enhancers	Colon Smooth Muscle	Colon
38	chr7:16107000-16108000	Weak transcription	Fetal Brain Female	brain
39	chr7:16107000-16108000	Enhancers	NHDF-Ad	bronchial
40	chr7:16107000-16108200	Enhancers	Fetal Lung	lung
41	chr7:16107000-16111000	Weak transcription	Stomach Mucosa	stomach
42	chr7:16107200-16107600	Active TSS	Ovary	ovary
43	chr7:16107400-16107600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:16107400-16107600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:16107400-16107600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:16107400-16107600	Enhancers	Brain Hippocampus Middle	brain
47	chr7:16107400-16107600	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr7:16107400-16107800	Flanking Active TSS	Psoas Muscle	Psoas
49	chr7:16107400-16108200	Enhancers	Skeletal Muscle Male	skeletal muscle

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