Variant report

Variant	rs11762563
Chromosome Location	chr7:16097100-16097101
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10487911	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10950600	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10950601	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11760631	0.81[AMR][1000 genomes]
rs11760717	0.81[AMR][1000 genomes]
rs11766276	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11773533	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12533693	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12537658	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12539174	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12539945	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12667418	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12699766	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12699767	0.81[AFR][1000 genomes]
rs12699769	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13221870	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13231996	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1405591	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1527203	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1527205	0.81[AMR][1000 genomes]
rs17284967	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2240855	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28444529	0.82[EUR][1000 genomes]
rs66933521	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6959719	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs758702	0.81[ASN][1000 genomes]
rs7777809	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7785638	0.85[ASN][1000 genomes]
rs7801576	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16086400-16100200	Weak transcription	NHDF-Ad	bronchial
2	chr7:16091800-16103000	Weak transcription	Right Atrium	heart
3	chr7:16092200-16100600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:16092800-16099200	Weak transcription	Fetal Lung	lung
5	chr7:16096000-16106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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