Variant report

Variant	rs10277303
Chromosome Location	chr7:107237523-107237524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107219336..107222149-chr7:107234347..107238081,3	MCF-7	breast:
2	chr7:107236873..107239093-chr7:107263842..107266780,2	MCF-7	breast:
3	chr7:107219418..107222356-chr7:107237027..107239369,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075790	Chromatin interaction
ENSG00000272854	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10242151	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10248056	1.00[EUR][1000 genomes]
rs10258419	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10953542	0.89[AFR][1000 genomes]
rs11974387	1.00[EUR][1000 genomes]
rs2299429	1.00[EUR][1000 genomes]
rs3753114	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57384395	1.00[EUR][1000 genomes]
rs61115046	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107221200-107272000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:107221400-107253800	Weak transcription	Ovary	ovary
3	chr7:107221400-107254200	Weak transcription	Thymus	Thymus
4	chr7:107221400-107256400	Weak transcription	Lung	lung
5	chr7:107221400-107272400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:107221400-107276000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:107221600-107254200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:107221800-107243200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:107221800-107243400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:107221800-107249400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:107222000-107242000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:107222400-107241600	Weak transcription	Colonic Mucosa	Colon
13	chr7:107222400-107242200	Weak transcription	HepG2	liver
14	chr7:107222400-107258200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:107222600-107237600	Weak transcription	Psoas Muscle	Psoas
16	chr7:107223000-107254400	Weak transcription	Brain Germinal Matrix	brain
17	chr7:107223200-107240400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:107223400-107256800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr7:107223600-107254400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:107223600-107256600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr7:107225600-107254000	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:107226200-107254000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:107226800-107254200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:107226800-107254800	Weak transcription	Fetal Thymus	thymus
25	chr7:107227800-107253800	Weak transcription	Brain Angular Gyrus	brain
26	chr7:107227800-107265400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:107229400-107245800	Weak transcription	Right Ventricle	heart
28	chr7:107229600-107249600	Weak transcription	Brain Anterior Caudate	brain
29	chr7:107230200-107256400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:107232400-107238400	Strong transcription	K562	blood
31	chr7:107233200-107238000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:107233600-107256800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:107234200-107237800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr7:107234200-107238000	Enhancers	HMEC	breast
35	chr7:107234200-107246200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:107234400-107239200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:107234400-107239200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr7:107234400-107244800	Strong transcription	Placenta	Placenta
39	chr7:107234600-107238800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:107234600-107238800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr7:107234800-107238600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr7:107235200-107238200	Strong transcription	Dnd41	blood
43	chr7:107235200-107271800	Weak transcription	Small Intestine	intestine
44	chr7:107235800-107237600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr7:107235800-107245800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:107235800-107247400	Weak transcription	Fetal Stomach	stomach
47	chr7:107235800-107249400	Weak transcription	Aorta	Aorta
48	chr7:107235800-107254000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:107235800-107254400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:107235800-107268200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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