Variant report

Variant	rs10258419
Chromosome Location	chr7:107164762-107164763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107164671..107167823-chr7:107168530..107171856,3	K562	blood:
2	chr7:107162501..107165341-chr7:107166519..107168432,2	K562	blood:
3	chr7:107156199..107157888-chr7:107162043..107164824,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10242151	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1024400	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10244682	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10248056	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10277303	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11974387	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237669	0.92[AFR][1000 genomes]
rs2299429	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3753114	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3801957	0.81[ASN][1000 genomes]
rs57384395	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61115046	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61448014	0.82[ASN][1000 genomes]
rs9918725	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv967469	chr7:107155013-107168166	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107123600-107166200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr7:107126800-107184800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:107127400-107175400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:107131400-107179800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:107131800-107175000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:107136000-107165800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr7:107137000-107166200	Weak transcription	K562	blood
8	chr7:107141600-107166000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:107142000-107167000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr7:107144400-107166400	Weak transcription	NH-A	brain
11	chr7:107144800-107185000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:107146000-107185000	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:107146400-107183800	Weak transcription	Ovary	ovary
14	chr7:107146400-107183800	Weak transcription	Thymus	Thymus
15	chr7:107146400-107184000	Weak transcription	Aorta	Aorta
16	chr7:107146600-107169000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:107147000-107169800	Weak transcription	Gastric	stomach
18	chr7:107147000-107178200	Weak transcription	Liver	Liver
19	chr7:107147400-107168600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:107147400-107169000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:107147600-107165600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:107147600-107166600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr7:107147600-107168600	Weak transcription	HMEC	breast
24	chr7:107147600-107169600	Weak transcription	Pancreas	Pancrea
25	chr7:107147600-107178400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr7:107147600-107183600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:107147800-107164800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr7:107147800-107169000	Weak transcription	HUVEC	blood vessel
29	chr7:107148400-107166600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:107149400-107183800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:107149600-107178800	Weak transcription	Fetal Stomach	stomach
32	chr7:107153800-107183800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:107154000-107193800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:107155200-107171200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:107156000-107178400	Weak transcription	Fetal Intestine Large	intestine
36	chr7:107156400-107195000	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:107157200-107165000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr7:107157400-107169600	Weak transcription	Fetal Heart	heart
39	chr7:107157600-107169600	Weak transcription	Left Ventricle	heart
40	chr7:107158000-107183800	Weak transcription	Esophagus	oesophagus
41	chr7:107159000-107164800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr7:107159400-107172400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr7:107160000-107168400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr7:107160200-107165800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:107160200-107169200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr7:107160400-107166200	Weak transcription	HepG2	liver
47	chr7:107160800-107168600	Weak transcription	HSMM	muscle
48	chr7:107161000-107185000	Weak transcription	HSMMtube	muscle
49	chr7:107161600-107169200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:107161800-107166200	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links