Variant report

Variant	rs10278325
Chromosome Location	chr7:96466252-96466253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1522530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2922964	0.86[EUR][1000 genomes]
rs2948250	0.93[EUR][1000 genomes]
rs2948269	0.93[EUR][1000 genomes]
rs2969407	0.93[EUR][1000 genomes]
rs4236535	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5857	chr7:96440164-96494110	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv5	chr7:96451352-96494110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96463800-96466800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:96463800-96466800	Weak transcription	Osteobl	bone
3	chr7:96464000-96466400	Weak transcription	HepG2	liver
4	chr7:96465200-96469000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr7:96465400-96466400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr7:96465400-96466600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:96465400-96468600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:96465400-96468600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr7:96465400-96469200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr7:96465800-96466400	Active TSS	Monocytes-CD14+_RO01746	blood
11	chr7:96465800-96467000	Flanking Active TSS	Dnd41	blood
12	chr7:96465800-96467200	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr7:96465800-96467800	Enhancers	Ovary	ovary
14	chr7:96466000-96466400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr7:96466000-96466800	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:96466000-96467000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr7:96466000-96467200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:96466000-96468000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr7:96466000-96468200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:96466200-96466600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:96466200-96466600	Enhancers	Fetal Thymus	thymus
22	chr7:96466200-96466600	Enhancers	Spleen	Spleen
23	chr7:96466200-96466800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:96466200-96467000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:96466200-96467200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr7:96466200-96467400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:96466200-96467600	Enhancers	GM12878-XiMat	blood
28	chr7:96466200-96468200	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr7:96466200-96468200	Enhancers	Primary T cells fromperipheralblood	blood

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