Variant report

Variant	rs1522530
Chromosome Location	chr7:96461630-96461631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10278325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2922964	0.86[EUR][1000 genomes]
rs2948250	0.93[EUR][1000 genomes]
rs2948269	0.93[EUR][1000 genomes]
rs2969407	0.93[EUR][1000 genomes]
rs4236535	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5857	chr7:96440164-96494110	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv5	chr7:96451352-96494110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96456800-96463200	Weak transcription	Stomach Mucosa	stomach
2	chr7:96461000-96461800	Enhancers	Fetal Stomach	stomach
3	chr7:96461200-96461800	Enhancers	Brain Germinal Matrix	brain
4	chr7:96461200-96461800	Weak transcription	Osteobl	bone
5	chr7:96461200-96462000	Enhancers	Ovary	ovary
6	chr7:96461400-96462200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:96461400-96464000	Enhancers	HepG2	liver
8	chr7:96461600-96462000	Enhancers	NHDF-Ad	bronchial
9	chr7:96461600-96463800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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