Variant report

Variant	rs10278593
Chromosome Location	chr7:78492613-78492614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10229592	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10242250	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10252891	0.81[AFR][1000 genomes]
rs10276574	0.94[AFR][1000 genomes]
rs28578976	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78491000-78494000	Enhancers	Fetal Lung	lung
2	chr7:78491800-78493400	Enhancers	Fetal Heart	heart
3	chr7:78492000-78493000	Enhancers	Fetal Intestine Small	intestine
4	chr7:78492000-78493400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:78492200-78493000	Enhancers	NHLF	lung
6	chr7:78492200-78494200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:78492400-78493000	Enhancers	Fetal Intestine Large	intestine
8	chr7:78492400-78493800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:78492600-78493000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:78492600-78493000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:78492600-78493000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:78492600-78493000	Enhancers	Left Ventricle	heart
13	chr7:78492600-78493000	Enhancers	Right Atrium	heart
14	chr7:78492600-78493000	Enhancers	Right Ventricle	heart
15	chr7:78492600-78493800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:78492600-78493800	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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