Variant report

Variant	rs28578976
Chromosome Location	chr7:78479265-78479266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10229592	0.87[AFR][1000 genomes]
rs10242250	0.87[AFR][1000 genomes]
rs10252891	0.86[AFR][1000 genomes]
rs10276574	0.87[AFR][1000 genomes]
rs10278593	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024961	chr7:78432257-78483201	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78478600-78480800	Enhancers	HSMMtube	muscle
2	chr7:78478600-78484600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:78478600-78484600	Enhancers	HSMM	muscle
4	chr7:78479200-78479600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:78479200-78480000	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78479200-78480200	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links