Variant report

Variant	rs10278676
Chromosome Location	chr7:120165022-120165023
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10242908	0.82[AFR][1000 genomes]
rs28502218	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120162400-120165600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120162400-120180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:120162600-120165600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:120163000-120165400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:120163200-120165200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:120163200-120165800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:120163200-120167400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:120163800-120165200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:120163800-120165800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:120163800-120167400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:120164600-120166000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:120164600-120166200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:120164800-120165200	Enhancers	Colon Smooth Muscle	Colon
14	chr7:120164800-120166200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:120165000-120166200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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