Variant report

Variant	rs10242908
Chromosome Location	chr7:120196576-120196577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120195175..120197471-chr7:120198217..120202322,3	K562	blood:
2	chr7:120191418..120193640-chr7:120194004..120197390,3	K562	blood:
3	chr7:120196322..120196976-chr7:120356989..120357794,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10085583	1.00[ASN][1000 genomes]
rs10156125	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10224280	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10224891	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10227379	1.00[CHD][hapmap]
rs10228326	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10234674	0.92[YRI][hapmap]
rs10239065	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10243095	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10245675	1.00[ASN][1000 genomes]
rs10247657	1.00[ASN][1000 genomes]
rs10248007	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10253512	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10257987	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10261574	1.00[ASN][1000 genomes]
rs10262473	1.00[MEX][hapmap];0.91[YRI][hapmap]
rs10262476	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10265695	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10268591	1.00[CHD][hapmap];0.85[YRI][hapmap]
rs10270560	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10270911	1.00[ASN][1000 genomes]
rs10272611	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10272979	0.86[ASN][1000 genomes]
rs10273127	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10273242	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10277086	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10278264	0.93[ASN][1000 genomes]
rs10278676	0.82[AFR][1000 genomes]
rs10282150	1.00[ASN][1000 genomes]
rs10488302	1.00[CHD][hapmap]
rs11536582	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12111645	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12111791	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12171571	1.00[ASN][1000 genomes]
rs13438753	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1527650	1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs1527654	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1609181	1.00[CHD][hapmap]
rs17142782	1.00[CHD][hapmap]
rs2049643	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs4540347	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6466749	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6971715	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap]
rs7357256	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7781274	0.83[YRI][hapmap]
rs7808927	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9640793	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9641643	1.00[CHB][hapmap]
rs9641644	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9641645	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9886093	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9886190	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120196000-120196600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:120196200-120196600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:120196200-120196600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:120196200-120196800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:120196200-120196800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:120196200-120196800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:120196200-120196800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:120196200-120197000	Enhancers	H1 Cell Line	embryonic stem cell

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