Variant report

Variant	rs9641644
Chromosome Location	chr7:120264007-120264008
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10085583	0.85[ASN][1000 genomes]
rs10156125	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10224280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10224891	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10228326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10239065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10242908	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10243095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10245675	0.85[ASN][1000 genomes]
rs10247657	0.85[ASN][1000 genomes]
rs10248007	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10253512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10257987	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10260490	1.00[JPT][hapmap]
rs10261574	0.85[ASN][1000 genomes]
rs10262476	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10265695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10270560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10270911	0.85[ASN][1000 genomes]
rs10272611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10272979	0.93[ASN][1000 genomes]
rs10273127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10273242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10277086	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10282150	0.85[ASN][1000 genomes]
rs11536582	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12111645	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12111791	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12171571	0.85[ASN][1000 genomes]
rs13438753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1527650	0.89[ASN][1000 genomes]
rs1527654	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2049643	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4540347	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6466749	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6970111	1.00[JPT][hapmap]
rs6970412	1.00[JPT][hapmap]
rs6978574	1.00[JPT][hapmap]
rs7357188	1.00[JPT][hapmap]
rs7357256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7808927	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs9640793	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9641643	1.00[CHB][hapmap]
rs9641645	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9886093	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9886190	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9886214	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120264000-120264400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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