Variant report

Variant	rs10243095
Chromosome Location	chr7:120205698-120205699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120199964..120202545-chr7:120204366..120206093,2	K562	blood:
2	chr7:120204677..120206283-chr7:120210805..120213588,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10085583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10156125	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10224280	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10224891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10228326	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10239065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10242908	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10245675	1.00[ASN][1000 genomes]
rs10247657	1.00[ASN][1000 genomes]
rs10248007	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10253512	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10257987	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10260490	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10261574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10262476	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10265695	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10270560	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10270911	1.00[ASN][1000 genomes]
rs10272611	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10272979	0.86[ASN][1000 genomes]
rs10273127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10273242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10277086	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10278264	0.93[ASN][1000 genomes]
rs10282150	1.00[ASN][1000 genomes]
rs11536582	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12111645	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12111791	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12171571	1.00[ASN][1000 genomes]
rs13438753	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1527650	0.82[ASN][1000 genomes]
rs1527654	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17142782	0.81[YRI][hapmap]
rs2049643	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4540347	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6466749	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6970111	1.00[JPT][hapmap]
rs6970412	1.00[JPT][hapmap]
rs6978574	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7357188	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7357256	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7808927	1.00[CHB][hapmap];0.88[YRI][hapmap];0.86[ASN][1000 genomes]
rs9640793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9641643	1.00[CHB][hapmap]
rs9641644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9641645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9886093	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9886190	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9886214	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120200400-120223000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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