Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10215028	1.00[CEU][hapmap]
rs10243451	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs1036140	1.00[CEU][hapmap]
rs10486037	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10950521	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs12532527	0.94[JPT][hapmap]
rs12532918	0.82[ASN][1000 genomes]
rs12535183	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12539016	0.81[ASN][1000 genomes]
rs12540554	0.82[ASN][1000 genomes]
rs12699614	1.00[CEU][hapmap]
rs1560575	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs17168132	0.84[CHB][hapmap]
rs4721334	0.80[ASN][1000 genomes]
rs6461092	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6461093	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6962861	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs6972732	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs7780569	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs7790717	0.82[ASN][1000 genomes]
rs7809958	0.82[ASN][1000 genomes]
rs891808	0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs9639191	0.82[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14428400-14429800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14428600-14429800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:14428600-14429800	Enhancers	Brain Germinal Matrix	brain
4	chr7:14429200-14429800	Enhancers	Liver	Liver

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