Variant report

Variant	rs10279467
Chromosome Location	chr7:63375605-63375606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10231140	0.85[AFR][1000 genomes]
rs10234872	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs10248861	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10256598	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs10267402	0.83[AMR][1000 genomes]
rs10269997	0.84[AFR][1000 genomes]
rs10271537	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10276713	0.85[AFR][1000 genomes]
rs28602599	0.85[AFR][1000 genomes]
rs55957720	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6948898	0.90[AFR][1000 genomes]
rs6949024	0.90[AFR][1000 genomes]
rs6966262	0.90[AFR][1000 genomes]
rs73697390	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888257	chr7:63226279-63464342	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv888258	chr7:63294907-63537173	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv888259	chr7:63363001-64009193	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	esv3365963	chr7:63367092-63587809	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	esv3496812	chr7:63367459-63649196	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	esv3496813	chr7:63367459-63649196	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	esv3336155	chr7:63368772-63650552	Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63361800-63379000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:63362200-63376200	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:63362400-63384400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:63372600-63378400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr7:63373000-63376000	Weak transcription	K562	blood
6	chr7:63373000-63385400	Weak transcription	Brain Anterior Caudate	brain
7	chr7:63373000-63385400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:63373000-63385400	Weak transcription	Ovary	ovary
9	chr7:63373000-63385600	Weak transcription	Gastric	stomach
10	chr7:63373200-63380200	Weak transcription	Pancreas	Pancrea
11	chr7:63374400-63376200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:63374800-63380800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:63374800-63385400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:63375000-63380000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:63375400-63376400	ZNF genes & repeats	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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