Variant report

Variant	rs73697390
Chromosome Location	chr7:63374505-63374506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:63368541..63372381-chr7:63373211..63376863,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF727-6	chr7:63374502-63374595	NONHSAT120952

Variant related genes	Relation type
ENSG00000226342	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10231140	0.93[AFR][1000 genomes]
rs10234872	0.92[AFR][1000 genomes]
rs10256598	0.93[AFR][1000 genomes]
rs10260831	0.80[AFR][1000 genomes]
rs10267402	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269997	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10271537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276713	0.93[AFR][1000 genomes]
rs10279467	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28602599	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55860679	0.80[AFR][1000 genomes]
rs73697401	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888257	chr7:63226279-63464342	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv888258	chr7:63294907-63537173	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv888259	chr7:63363001-64009193	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	esv3365963	chr7:63367092-63587809	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	esv3496812	chr7:63367459-63649196	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	esv3496813	chr7:63367459-63649196	Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	esv3336155	chr7:63368772-63650552	Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63361800-63379000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:63362200-63376200	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:63362400-63384400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:63363200-63374600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:63372000-63375600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:63372600-63374800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr7:63372600-63375200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr7:63372600-63378400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr7:63373000-63374600	Weak transcription	NH-A	brain
10	chr7:63373000-63375600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:63373000-63376000	Weak transcription	K562	blood
12	chr7:63373000-63385400	Weak transcription	Brain Anterior Caudate	brain
13	chr7:63373000-63385400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:63373000-63385400	Weak transcription	Ovary	ovary
15	chr7:63373000-63385600	Weak transcription	Gastric	stomach
16	chr7:63373200-63374600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:63373200-63374600	Weak transcription	Aorta	Aorta
18	chr7:63373200-63380200	Weak transcription	Pancreas	Pancrea
19	chr7:63374000-63374800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:63374200-63374800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:63374200-63374800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr7:63374400-63374800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
23	chr7:63374400-63374800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
24	chr7:63374400-63374800	ZNF genes & repeats	HUVEC	blood vessel
25	chr7:63374400-63375000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:63374400-63375000	ZNF genes & repeats	NHEK	skin
27	chr7:63374400-63375400	Strong transcription	Dnd41	blood
28	chr7:63374400-63376200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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