Variant report
| Variant | rs10281086 |
|---|---|
| Chromosome Location | chr7:108502899-108502900 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10155811 | 1.00[EUR][1000 genomes] |
| rs10225181 | 1.00[EUR][1000 genomes] |
| rs10226797 | 1.00[EUR][1000 genomes] |
| rs10229154 | 1.00[EUR][1000 genomes] |
| rs10230997 | 1.00[EUR][1000 genomes] |
| rs10238635 | 1.00[EUR][1000 genomes] |
| rs10241318 | 1.00[EUR][1000 genomes] |
| rs10255237 | 1.00[EUR][1000 genomes] |
| rs10268467 | 1.00[EUR][1000 genomes] |
| rs10273105 | 1.00[EUR][1000 genomes] |
| rs10279331 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1100228 | 1.00[EUR][1000 genomes] |
| rs16872645 | 1.00[EUR][1000 genomes] |
| rs28722885 | 1.00[EUR][1000 genomes] |
| rs6466257 | 1.00[AMR][1000 genomes] |
| rs6967977 | 1.00[EUR][1000 genomes] |
| rs6972924 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7780568 | 1.00[EUR][1000 genomes] |
| rs848371 | 1.00[EUR][1000 genomes] |
| rs848372 | 1.00[EUR][1000 genomes] |
| rs848413 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817371 | chr7:108199882-108649799 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031096 | chr7:108334543-108596014 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv888945 | chr7:108445757-108521842 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3447964 | chr7:108502711-108502905 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10281086 | UGT2B17 | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:108501800-108503200 | Weak transcription | Right Ventricle | heart |
