Variant report

Variant	rs10281777
Chromosome Location	chr7:12230013-12230014
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1020007	0.94[EUR][1000 genomes]
rs10235641	0.89[EUR][1000 genomes]
rs10250890	0.89[EUR][1000 genomes]
rs10260421	0.84[EUR][1000 genomes]
rs1042946	0.85[EUR][1000 genomes]
rs10950387	0.89[EUR][1000 genomes]
rs10950388	0.89[EUR][1000 genomes]
rs11977383	0.89[EUR][1000 genomes]
rs11977384	0.89[EUR][1000 genomes]
rs11980922	0.89[EUR][1000 genomes]
rs12531743	0.84[EUR][1000 genomes]
rs12534492	0.89[EUR][1000 genomes]
rs12536685	0.89[EUR][1000 genomes]
rs12536705	0.89[EUR][1000 genomes]
rs12537306	0.89[EUR][1000 genomes]
rs12537337	0.88[EUR][1000 genomes]
rs12539665	0.89[EUR][1000 genomes]
rs12699312	0.89[EUR][1000 genomes]
rs12699313	0.89[EUR][1000 genomes]
rs12699314	0.89[EUR][1000 genomes]
rs12699316	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12699317	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12699318	0.97[EUR][1000 genomes]
rs12699319	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12699322	0.88[EUR][1000 genomes]
rs12699325	0.88[EUR][1000 genomes]
rs12699326	0.88[EUR][1000 genomes]
rs12699334	0.85[EUR][1000 genomes]
rs12699337	0.85[EUR][1000 genomes]
rs12699339	0.85[EUR][1000 genomes]
rs12699340	0.82[EUR][1000 genomes]
rs12699341	0.82[EUR][1000 genomes]
rs13221483	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13221595	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13222858	0.81[EUR][1000 genomes]
rs13223216	0.88[EUR][1000 genomes]
rs13223296	0.81[EUR][1000 genomes]
rs13223381	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13226228	0.81[EUR][1000 genomes]
rs13226876	0.86[EUR][1000 genomes]
rs13227133	0.92[EUR][1000 genomes]
rs13228832	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13229277	0.90[EUR][1000 genomes]
rs13230297	0.89[EUR][1000 genomes]
rs13232977	0.89[EUR][1000 genomes]
rs13232992	0.89[EUR][1000 genomes]
rs13233005	0.89[EUR][1000 genomes]
rs13233228	0.89[EUR][1000 genomes]
rs13233611	0.89[EUR][1000 genomes]
rs13233991	0.88[EUR][1000 genomes]
rs13234238	0.88[EUR][1000 genomes]
rs13236057	0.89[EUR][1000 genomes]
rs13237543	0.90[EUR][1000 genomes]
rs13241051	0.89[EUR][1000 genomes]
rs13241891	0.89[EUR][1000 genomes]
rs13241969	0.89[EUR][1000 genomes]
rs13243169	0.89[EUR][1000 genomes]
rs13244303	0.90[EUR][1000 genomes]
rs13245483	0.90[EUR][1000 genomes]
rs13245840	0.89[EUR][1000 genomes]
rs13245891	0.89[EUR][1000 genomes]
rs13246024	0.97[EUR][1000 genomes]
rs13246340	0.88[EUR][1000 genomes]
rs13306984	0.88[EUR][1000 genomes]
rs13307377	0.89[EUR][1000 genomes]
rs13309255	0.85[EUR][1000 genomes]
rs13311466	0.88[EUR][1000 genomes]
rs1347436	0.89[EUR][1000 genomes]
rs34167422	0.81[EUR][1000 genomes]
rs34201361	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35390376	0.88[EUR][1000 genomes]
rs35560707	0.81[EUR][1000 genomes]
rs36104470	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6948974	0.89[EUR][1000 genomes]
rs6952453	0.89[EUR][1000 genomes]
rs6967233	0.89[EUR][1000 genomes]
rs6978380	0.89[EUR][1000 genomes]
rs6978570	0.89[EUR][1000 genomes]
rs6978632	0.86[EUR][1000 genomes]
rs6978650	0.89[EUR][1000 genomes]
rs71529336	0.85[EUR][1000 genomes]
rs71533421	0.89[EUR][1000 genomes]
rs71533422	0.89[EUR][1000 genomes]
rs7780991	0.90[EUR][1000 genomes]
rs7783565	0.89[EUR][1000 genomes]
rs7783576	0.89[EUR][1000 genomes]
rs7783947	0.89[EUR][1000 genomes]
rs7784236	0.87[EUR][1000 genomes]
rs7788029	0.89[EUR][1000 genomes]
rs7788225	0.89[EUR][1000 genomes]
rs7788563	0.87[EUR][1000 genomes]
rs7788670	0.81[EUR][1000 genomes]
rs7795567	0.82[EUR][1000 genomes]
rs7799766	0.97[EUR][1000 genomes]
rs7802974	0.87[EUR][1000 genomes]
rs7804819	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12228400-12238600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:12228600-12230800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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