Variant report

Variant	rs34201361
Chromosome Location	chr7:12210551-12210552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1020007	0.89[EUR][1000 genomes]
rs10235641	0.91[EUR][1000 genomes]
rs10250890	0.91[EUR][1000 genomes]
rs10260421	0.89[EUR][1000 genomes]
rs10281777	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1042946	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10950387	0.91[EUR][1000 genomes]
rs10950388	0.91[EUR][1000 genomes]
rs11977383	0.91[EUR][1000 genomes]
rs11977384	0.91[EUR][1000 genomes]
rs11979353	0.80[EUR][1000 genomes]
rs11979354	0.82[EUR][1000 genomes]
rs11980922	0.91[EUR][1000 genomes]
rs12531743	0.89[EUR][1000 genomes]
rs12534492	0.91[EUR][1000 genomes]
rs12536685	0.91[EUR][1000 genomes]
rs12536705	0.91[EUR][1000 genomes]
rs12537306	0.91[EUR][1000 genomes]
rs12537337	0.89[EUR][1000 genomes]
rs12539665	0.91[EUR][1000 genomes]
rs12699312	0.91[EUR][1000 genomes]
rs12699313	0.91[EUR][1000 genomes]
rs12699314	0.91[EUR][1000 genomes]
rs12699316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12699317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12699318	0.98[EUR][1000 genomes]
rs12699319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12699322	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12699325	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12699326	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12699334	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12699337	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12699339	0.80[EUR][1000 genomes]
rs12699340	0.82[AMR][1000 genomes]
rs12699341	0.82[AMR][1000 genomes]
rs13221483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13221595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13222858	0.82[AMR][1000 genomes]
rs13223216	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13223296	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13223381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13226228	0.82[EUR][1000 genomes]
rs13226876	0.87[EUR][1000 genomes]
rs13227133	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13228832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13229277	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13230297	0.91[EUR][1000 genomes]
rs13232977	0.91[EUR][1000 genomes]
rs13232992	0.91[EUR][1000 genomes]
rs13233005	0.91[EUR][1000 genomes]
rs13233228	0.91[EUR][1000 genomes]
rs13233611	0.91[EUR][1000 genomes]
rs13233991	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13234238	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13236057	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13237543	0.95[EUR][1000 genomes]
rs13241051	0.91[EUR][1000 genomes]
rs13241891	0.91[EUR][1000 genomes]
rs13241969	0.91[EUR][1000 genomes]
rs13243169	0.91[EUR][1000 genomes]
rs13244303	0.92[EUR][1000 genomes]
rs13245483	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13245840	0.91[EUR][1000 genomes]
rs13245891	0.91[EUR][1000 genomes]
rs13246024	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13246340	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13306984	0.89[EUR][1000 genomes]
rs13307377	0.91[EUR][1000 genomes]
rs13309255	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13311466	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1347436	0.91[EUR][1000 genomes]
rs34167422	0.82[AMR][1000 genomes]
rs35390376	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35560707	0.82[AMR][1000 genomes]
rs36104470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6948974	0.91[EUR][1000 genomes]
rs6952453	0.91[EUR][1000 genomes]
rs6967233	0.91[EUR][1000 genomes]
rs6978380	0.91[EUR][1000 genomes]
rs6978570	0.91[EUR][1000 genomes]
rs6978632	0.88[EUR][1000 genomes]
rs6978650	0.91[EUR][1000 genomes]
rs71529336	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71533421	0.91[EUR][1000 genomes]
rs71533422	0.91[EUR][1000 genomes]
rs71536872	0.81[AMR][1000 genomes]
rs7780991	0.92[EUR][1000 genomes]
rs7783565	0.91[EUR][1000 genomes]
rs7783576	0.91[EUR][1000 genomes]
rs7783947	0.91[EUR][1000 genomes]
rs7784236	0.92[EUR][1000 genomes]
rs7788029	0.91[EUR][1000 genomes]
rs7788225	0.91[EUR][1000 genomes]
rs7788563	0.92[EUR][1000 genomes]
rs7788670	0.85[EUR][1000 genomes]
rs7795567	0.84[EUR][1000 genomes]
rs7799766	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7802974	0.92[EUR][1000 genomes]
rs7804819	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv887627	chr7:12178793-12227892	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv887628	chr7:12186502-12227892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12209200-12210800	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr7:12209200-12212000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:12209400-12211800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:12209400-12211800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:12209600-12210800	Enhancers	Primary T cells from cord blood	blood
6	chr7:12209600-12211000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:12209800-12210600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr7:12209800-12210600	Enhancers	Lung	lung
9	chr7:12210000-12210600	Enhancers	Hela-S3	cervix
10	chr7:12210200-12211000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr7:12210200-12211000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr7:12210200-12211000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:12210200-12211400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr7:12210200-12211800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:12210200-12212000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:12210400-12210600	Flanking Active TSS	A549	lung
17	chr7:12210400-12211400	Weak transcription	HepG2	liver
18	chr7:12210400-12211600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links