Variant report

Variant	rs10282129
Chromosome Location	chr7:83748815-83748816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10230974	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10231580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232605	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10244779	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10257628	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10263183	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10277194	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10278542	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10488270	0.98[EUR][1000 genomes]
rs10488271	0.97[EUR][1000 genomes]
rs11769574	0.96[EUR][1000 genomes]
rs11773308	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12707621	0.86[EUR][1000 genomes]
rs13222995	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13228652	0.98[EUR][1000 genomes]
rs13246393	0.85[EUR][1000 genomes]
rs1541410	0.99[EUR][1000 genomes]
rs17158648	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17158650	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17158668	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17158671	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17301441	0.97[EUR][1000 genomes]
rs2040873	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2040874	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2158567	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2189851	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2214665	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2301892	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2372034	0.98[EUR][1000 genomes]
rs34018474	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34805696	0.99[EUR][1000 genomes]
rs35789545	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3801653	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801656	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4461845	0.97[EUR][1000 genomes]
rs6959163	0.97[EUR][1000 genomes]
rs7778244	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7780521	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7781126	0.81[EUR][1000 genomes]
rs7791361	0.81[EUR][1000 genomes]
rs7794876	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811829	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83734400-83762800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:83741400-83753400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:83743000-83750400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:83743000-83756400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:83743200-83751800	Weak transcription	NHDF-Ad	bronchial
6	chr7:83743200-83752600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:83743400-83752400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:83743800-83752200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:83743800-83753200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:83744000-83752000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:83744400-83753400	Weak transcription	NHLF	lung
12	chr7:83745000-83769400	Weak transcription	Fetal Stomach	stomach
13	chr7:83746200-83753200	Weak transcription	Colon Smooth Muscle	Colon
14	chr7:83746800-83749800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:83747000-83752000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:83747200-83752000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:83747200-83752400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:83747200-83753200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:83747400-83752800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr7:83748000-83751800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:83748000-83753200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:83748400-83752000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:83748400-83752400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:83748800-83753200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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