Variant report

Variant	rs7791361
Chromosome Location	chr7:83786844-83786845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10230974	0.81[EUR][1000 genomes]
rs10231580	0.86[CHB][hapmap]
rs10232605	0.86[CHB][hapmap];0.91[JPT][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10244779	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10257628	0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10263183	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10277194	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10278542	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10282129	0.81[EUR][1000 genomes]
rs10488270	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10488271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769574	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11773308	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12707621	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs13222995	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13228652	0.92[ASN][1000 genomes]
rs13246393	0.84[ASN][1000 genomes]
rs17158648	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17158650	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17158668	0.85[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17158671	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17301441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2040874	0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2158567	0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2189851	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2214665	0.86[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2372034	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2527035	0.82[CEU][hapmap]
rs34018474	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34443324	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34449541	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34805696	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34892444	0.83[AFR][1000 genomes]
rs35789545	0.82[ASN][1000 genomes]
rs3801653	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3801656	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4461845	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6959163	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7778244	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7780521	0.81[EUR][1000 genomes]
rs7781126	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7794876	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7811829	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv517852	chr7:83782435-83794756	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv888630	chr7:83782839-83809111	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83770800-83795000	Weak transcription	NHDF-Ad	bronchial
2	chr7:83775400-83791600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:83777000-83803000	Weak transcription	NHLF	lung
4	chr7:83778000-83803000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:83779400-83791600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:83783000-83788800	Weak transcription	Fetal Heart	heart
7	chr7:83784200-83787200	Enhancers	Fetal Lung	lung
8	chr7:83784800-83787000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:83785000-83789000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:83785000-83791600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:83785000-83803000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:83785200-83790600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:83785200-83790800	Weak transcription	Fetal Stomach	stomach
14	chr7:83786200-83787200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:83786400-83787000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:83786400-83787000	Enhancers	NH-A	brain
17	chr7:83786400-83787200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:83786400-83787200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:83786400-83787200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:83786400-83787400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:83786600-83787000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr7:83786600-83787000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr7:83786600-83787200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr7:83786600-83787200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr7:83786600-83787400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:83786600-83787800	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:83786600-83787800	Weak transcription	Rectal Smooth Muscle	rectum

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