Variant report

Variant	rs10282777
Chromosome Location	chr8:78068366-78068367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10100694	0.85[ASN][1000 genomes]
rs12541917	0.86[ASN][1000 genomes]
rs12550461	0.95[ASN][1000 genomes]
rs12680335	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13269590	0.82[EUR][1000 genomes]
rs1377246	0.82[EUR][1000 genomes]
rs1377247	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1377254	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1452809	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1813571	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1982434	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2167730	0.88[EUR][1000 genomes]
rs35353965	0.92[ASN][1000 genomes]
rs4147343	0.82[EUR][1000 genomes]
rs6998856	0.86[ASN][1000 genomes]
rs7016358	0.83[EUR][1000 genomes]
rs7016911	0.82[EUR][1000 genomes]
rs71509310	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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