Variant report

Variant	rs6998856
Chromosome Location	chr8:78042725-78042726
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10100694	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10282777	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12541917	1.00[ASN][1000 genomes]
rs12550461	0.87[ASN][1000 genomes]
rs12680335	0.90[ASN][1000 genomes]
rs1377247	0.90[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1377254	0.94[ASN][1000 genomes]
rs1452809	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1813571	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1982434	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35353965	0.90[ASN][1000 genomes]
rs71509310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020007	chr8:78021376-78059834	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78041400-78043400	Enhancers	Fetal Heart	heart
2	chr8:78041600-78043200	Enhancers	Brain Germinal Matrix	brain
3	chr8:78042600-78042800	Enhancers	Brain Hippocampus Middle	brain
4	chr8:78042600-78043000	Enhancers	HSMM	muscle
5	chr8:78042600-78043400	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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