Variant report

Variant	rs1028608
Chromosome Location	chr6:44681721-44681722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10456118	0.85[EUR][1000 genomes]
rs10456535	0.85[EUR][1000 genomes]
rs10456536	0.84[EUR][1000 genomes]
rs10948155	0.83[EUR][1000 genomes]
rs10948156	0.87[EUR][1000 genomes]
rs11962872	0.86[EUR][1000 genomes]
rs12198153	0.86[EUR][1000 genomes]
rs12205657	0.87[EUR][1000 genomes]
rs1418432	0.86[EUR][1000 genomes]
rs2023311	0.86[EUR][1000 genomes]
rs2023314	0.86[EUR][1000 genomes]
rs2128543	0.89[EUR][1000 genomes]
rs56110323	0.86[EUR][1000 genomes]
rs56115627	0.93[EUR][1000 genomes]
rs56300373	0.85[EUR][1000 genomes]
rs60328783	0.84[EUR][1000 genomes]
rs62435997	0.86[EUR][1000 genomes]
rs62435998	0.82[EUR][1000 genomes]
rs62435999	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817071	chr6:44670110-44698829	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44667200-44691000	Weak transcription	Right Atrium	heart
2	chr6:44679400-44683600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:44679600-44682400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:44679800-44682200	Enhancers	Fetal Muscle Leg	muscle
5	chr6:44680800-44682200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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