Variant report

Variant	rs12198153
Chromosome Location	chr6:44691878-44691879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44681103..44683539-chr6:44690355..44693257,2	MCF-7	breast:
2	chr6:44691206..44694141-chr6:44700242..44701897,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1028608	0.86[EUR][1000 genomes]
rs10456118	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484625	0.95[CEU][hapmap]
rs10484626	0.95[CEU][hapmap]
rs10807302	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10948155	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948156	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948172	0.95[CEU][hapmap]
rs10948176	0.95[CEU][hapmap]
rs11962872	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197593	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12202704	0.86[CEU][hapmap]
rs12204270	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205657	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208621	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12209944	0.95[CEU][hapmap]
rs12215181	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12215263	0.95[CEU][hapmap]
rs1418432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552196	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023311	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023314	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2128543	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3997499	0.95[CEU][hapmap]
rs529125	0.95[CEU][hapmap]
rs56110323	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115627	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56172130	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56300373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59107271	0.88[AMR][1000 genomes]
rs60328783	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62435997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62435998	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62435999	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349931	0.95[CEU][hapmap]
rs755	0.95[CEU][hapmap]
rs756	0.95[CEU][hapmap]
rs7765371	0.95[CEU][hapmap]
rs857601	0.95[CEU][hapmap]
rs860741	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs9367210	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817071	chr6:44670110-44698829	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44689600-44693200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:44690200-44693200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:44690400-44698000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:44691000-44692000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:44691000-44692000	Enhancers	Spleen	Spleen
6	chr6:44691400-44692600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:44691400-44692800	Weak transcription	Right Atrium	heart
8	chr6:44691400-44695400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:44691600-44693000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:44691600-44695400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:44691800-44692800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:44691800-44692800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links