Variant report

Variant	rs59107271
Chromosome Location	chr6:44751667-44751668
allele	-/AGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44749501..44752390-chr6:44755205..44757240,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10456118	0.88[AMR][1000 genomes]
rs10456535	0.88[AMR][1000 genomes]
rs10456536	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10807302	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10948155	0.82[AMR][1000 genomes]
rs10948156	0.88[AMR][1000 genomes]
rs10948171	0.92[ASN][1000 genomes]
rs10948172	0.92[ASN][1000 genomes]
rs11962872	0.88[AMR][1000 genomes]
rs12197593	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12198016	0.92[ASN][1000 genomes]
rs12198153	0.88[AMR][1000 genomes]
rs12200892	0.85[ASN][1000 genomes]
rs12202698	0.92[ASN][1000 genomes]
rs12204270	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12208621	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209944	0.92[ASN][1000 genomes]
rs12215095	0.92[ASN][1000 genomes]
rs12215181	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215971	0.92[ASN][1000 genomes]
rs1418432	0.88[AMR][1000 genomes]
rs1552196	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2128543	0.84[AMR][1000 genomes]
rs4644056	0.92[ASN][1000 genomes]
rs529125	0.89[ASN][1000 genomes]
rs56115627	0.84[AMR][1000 genomes]
rs56172130	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56300373	0.88[AMR][1000 genomes]
rs60328783	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62435997	0.88[AMR][1000 genomes]
rs62435998	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62435999	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62436022	0.85[ASN][1000 genomes]
rs62437973	0.92[ASN][1000 genomes]
rs7349931	0.92[ASN][1000 genomes]
rs755	0.82[ASN][1000 genomes]
rs756	0.89[ASN][1000 genomes]
rs7765371	0.92[ASN][1000 genomes]
rs857601	0.89[ASN][1000 genomes]
rs860741	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9463042	0.92[ASN][1000 genomes]
rs9463043	0.92[ASN][1000 genomes]
rs9472365	0.92[ASN][1000 genomes]
rs9472367	0.92[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44740000-44752000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:44751000-44752800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:44751400-44751800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:44751400-44752400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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