Variant report

Variant	rs12200892
Chromosome Location	chr6:44768925-44768926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10456120	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs10484625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10484626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10948171	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10948172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10948176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12190313	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs12197593	0.82[ASN][1000 genomes]
rs12198016	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12198308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12202609	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12202698	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12202704	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12208332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs12208605	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12208621	0.85[ASN][1000 genomes]
rs12209944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12210292	1.00[CHB][hapmap]
rs12211922	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12212190	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12214435	0.83[EUR][1000 genomes]
rs12215095	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215263	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12215971	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1329711	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17423748	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3997499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4644056	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs529125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59107271	0.85[ASN][1000 genomes]
rs62436022	0.88[AMR][1000 genomes]
rs62436368	0.81[EUR][1000 genomes]
rs62436369	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62436374	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62436375	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62436376	0.85[EUR][1000 genomes]
rs62437973	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62438018	0.86[EUR][1000 genomes]
rs7349931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7765371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs857601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs860741	0.95[CEU][hapmap];0.81[ASN][1000 genomes]
rs9367210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9463042	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9463043	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9472365	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9472367	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44761800-44776200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:44767000-44769200	Enhancers	Fetal Intestine Large	intestine
3	chr6:44767200-44769600	Enhancers	Psoas Muscle	Psoas
4	chr6:44767800-44769000	Enhancers	Fetal Heart	heart
5	chr6:44767800-44769200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:44767800-44769400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:44768000-44769000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:44768000-44769000	Enhancers	Fetal Lung	lung
9	chr6:44768000-44769000	Enhancers	Left Ventricle	heart
10	chr6:44768000-44769000	Enhancers	Lung	lung
11	chr6:44768000-44769000	Enhancers	Pancreas	Pancrea
12	chr6:44768000-44769400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:44768000-44769400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:44768000-44769400	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr6:44768200-44769000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:44768200-44769600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
17	chr6:44768400-44769200	Enhancers	Ovary	ovary
18	chr6:44768400-44769400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:44768400-44769600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:44768400-44772200	Weak transcription	Liver	Liver
21	chr6:44768600-44769200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr6:44768600-44769200	Bivalent Enhancer	Fetal Stomach	stomach
23	chr6:44768600-44769200	Enhancers	Fetal Thymus	thymus
24	chr6:44768600-44769400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:44768600-44772600	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:44768800-44769200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:44768800-44769200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:44768800-44770000	Enhancers	Adipose Nuclei	Adipose
29	chr6:44768800-44772200	Weak transcription	Fetal Intestine Small	intestine
30	chr6:44768800-44772400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:44768800-44773400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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