Variant report

Variant	rs4644056
Chromosome Location	chr6:44776136-44776137
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44774069..44776397-chr6:44778868..44780744,2	K562	blood:
2	chr6:44775398..44777439-chr6:44790507..44792288,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10456120	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs10484625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10484626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10807302	0.85[ASN][1000 genomes]
rs10948171	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12190313	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs12191977	0.81[EUR][1000 genomes]
rs12193264	0.81[EUR][1000 genomes]
rs12197593	0.89[ASN][1000 genomes]
rs12198016	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs12200892	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12202609	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12202698	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202704	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12208332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12208605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[TSI][hapmap]
rs12208621	0.92[ASN][1000 genomes]
rs12209944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210292	1.00[CHB][hapmap]
rs12211922	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12212190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs12214435	0.85[EUR][1000 genomes]
rs12214794	0.81[EUR][1000 genomes]
rs12215095	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215181	0.85[ASN][1000 genomes]
rs12215263	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12215971	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329709	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1329711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs17423748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs3997499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs529125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55864280	0.81[EUR][1000 genomes]
rs59107271	0.92[ASN][1000 genomes]
rs62436022	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62436368	0.83[EUR][1000 genomes]
rs62436369	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62436374	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62436375	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62436376	0.87[EUR][1000 genomes]
rs62437973	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62438018	0.88[EUR][1000 genomes]
rs7349931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7765371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs860741	0.95[CEU][hapmap];0.88[ASN][1000 genomes]
rs9367210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9463042	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463043	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472365	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472367	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4644056	SUPT3H	cis	parietal	SCAN
rs4644056	SUPT3H	cis	cerebellum	SCAN
rs4644056	LOC100132354	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44761800-44776200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:44772600-44776800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44773200-44776200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:44773800-44776200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:44775000-44776200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:44775000-44777000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:44775800-44776200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:44775800-44776400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:44775800-44776400	Enhancers	NH-A	brain
10	chr6:44776000-44776800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:44776000-44777000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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