Variant report

Variant	rs12208621
Chromosome Location	chr6:44752003-44752004
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44749501..44752390-chr6:44755205..44757240,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10456118	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10456120	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs10456535	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10456536	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10484625	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10484626	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs10807302	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10948155	0.84[AMR][1000 genomes]
rs10948156	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10948171	0.92[ASN][1000 genomes]
rs10948172	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs10948176	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs11962872	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12190313	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs12192367	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs12197593	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12198016	0.92[ASN][1000 genomes]
rs12198153	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12198308	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs12200892	0.85[ASN][1000 genomes]
rs12202698	0.92[ASN][1000 genomes]
rs12202704	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs12204270	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12208332	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs12209944	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12210292	1.00[CHB][hapmap]
rs12212190	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs12215095	0.92[ASN][1000 genomes]
rs12215181	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215263	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs12215971	0.92[ASN][1000 genomes]
rs1342370	0.85[AFR][1000 genomes]
rs1418432	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1418434	0.85[AFR][1000 genomes]
rs1552196	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17423748	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs2038555	0.85[AFR][1000 genomes]
rs2038556	0.85[AFR][1000 genomes]
rs2038557	0.85[AFR][1000 genomes]
rs2040032	0.85[AFR][1000 genomes]
rs2128543	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3997499	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs4644056	0.92[ASN][1000 genomes]
rs4714820	0.85[AFR][1000 genomes]
rs4714821	0.85[AFR][1000 genomes]
rs4714822	0.85[AFR][1000 genomes]
rs529125	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs56115627	0.87[AMR][1000 genomes]
rs56172130	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56300373	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59107271	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60328783	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62435997	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62435998	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62435999	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62436022	0.85[ASN][1000 genomes]
rs62437973	0.92[ASN][1000 genomes]
rs71564699	0.81[AFR][1000 genomes]
rs7349931	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs755	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs756	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7765371	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs857601	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs860741	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367210	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs9463042	0.92[ASN][1000 genomes]
rs9463043	0.92[ASN][1000 genomes]
rs9472360	0.85[AFR][1000 genomes]
rs9472365	0.92[ASN][1000 genomes]
rs9472367	0.92[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44751000-44752800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:44751400-44752400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:44752000-44752400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:44752000-44752800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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