Variant report

Variant	rs9367210
Chromosome Location	chr6:44863395-44863396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10456120	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484627	1.00[YRI][hapmap]
rs10948171	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10948172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs10948176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948185	1.00[YRI][hapmap]
rs10948192	0.91[YRI][hapmap]
rs10948196	1.00[JPT][hapmap]
rs11961316	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11967224	0.84[EUR][1000 genomes]
rs11970412	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12190313	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191977	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12193264	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12194924	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12196188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12198016	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12198308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12200892	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12202609	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12202698	0.88[EUR][1000 genomes]
rs12202704	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208523	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12208605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12209944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs12210292	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12211922	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12212190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12214435	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214794	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12215095	0.84[EUR][1000 genomes]
rs12215263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12215971	0.88[EUR][1000 genomes]
rs12525009	1.00[YRI][hapmap]
rs1329709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1329711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1329714	0.83[YRI][hapmap]
rs17423748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1971482	0.84[YRI][hapmap]
rs2396372	1.00[YRI][hapmap]
rs3799973	0.91[YRI][hapmap]
rs3799976	1.00[YRI][hapmap]
rs3799977	1.00[YRI][hapmap]
rs3799979	1.00[YRI][hapmap]
rs3997499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644056	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4711807	0.91[YRI][hapmap]
rs4714828	1.00[YRI][hapmap]
rs529125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55864280	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62436368	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436374	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436375	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436376	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436395	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62436396	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62436411	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62436436	0.83[EUR][1000 genomes]
rs62437973	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62438018	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908606	0.80[EUR][1000 genomes]
rs6909047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs6924185	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs72865924	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7349931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7765371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs857601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs860741	0.95[CEU][hapmap]
rs9463042	0.87[EUR][1000 genomes]
rs9463043	0.87[EUR][1000 genomes]
rs9472365	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44854600-44866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:44862800-44863600	Enhancers	Fetal Heart	heart
5	chr6:44863000-44865600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:44863200-44866600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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