Variant report

Variant	rs72865924
Chromosome Location	chr6:44878943-44878944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44878819..44880569-chr6:44884458..44887437,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10456120	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10484625	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10484626	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10948176	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12190313	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12191977	0.82[EUR][1000 genomes]
rs12193264	0.81[EUR][1000 genomes]
rs12198308	0.84[EUR][1000 genomes]
rs12202609	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12202698	0.81[EUR][1000 genomes]
rs12202704	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12208332	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12209944	0.81[EUR][1000 genomes]
rs12211922	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12212190	0.82[EUR][1000 genomes]
rs12214435	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12214794	0.82[EUR][1000 genomes]
rs12215263	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12215971	0.81[EUR][1000 genomes]
rs3997499	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs529125	0.81[EUR][1000 genomes]
rs55864280	0.82[EUR][1000 genomes]
rs62436368	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62436369	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62436374	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62436375	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62436376	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62438018	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7349931	0.81[EUR][1000 genomes]
rs755	0.81[EUR][1000 genomes]
rs756	0.82[EUR][1000 genomes]
rs857601	0.81[EUR][1000 genomes]
rs9367210	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:44864800-44888400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:44866600-44879600	Weak transcription	Pancreas	Pancrea
5	chr6:44873200-44888000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:44874800-44889400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:44875000-44888800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:44877800-44892800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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