Variant report

Variant	rs12202609
Chromosome Location	chr6:44849693-44849694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10456120	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484625	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484626	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948171	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10948172	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10948176	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11967224	0.81[EUR][1000 genomes]
rs12190313	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12191977	0.89[EUR][1000 genomes]
rs12193264	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12194924	0.82[EUR][1000 genomes]
rs12196188	0.82[EUR][1000 genomes]
rs12198016	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12198308	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12200892	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12202698	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12202704	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12208332	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12208605	0.82[EUR][1000 genomes]
rs12209944	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12211922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212190	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12214435	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12214794	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12215095	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12215263	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12215971	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1329709	0.81[EUR][1000 genomes]
rs1329711	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17423748	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3997499	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4644056	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs529125	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55864280	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62436368	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436369	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436374	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436375	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436376	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436395	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62436396	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62436411	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62436436	0.81[EUR][1000 genomes]
rs62437973	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62438018	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72865924	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7349931	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs755	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs756	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7765371	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs857601	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9367210	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9463042	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9463043	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472365	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44838400-44854200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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