Variant report

Variant	rs62436411
Chromosome Location	chr6:44940706-44940707
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44935484..44938452-chr6:44939240..44940813,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10456120	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10456121	0.81[EUR][1000 genomes]
rs10484625	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10484626	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10948176	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10948196	0.89[ASN][1000 genomes]
rs10948201	0.82[EUR][1000 genomes]
rs11967224	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11970412	0.82[EUR][1000 genomes]
rs12190313	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12191977	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12193264	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12194924	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196188	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198308	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202609	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12202704	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12208332	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12208605	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210292	1.00[ASN][1000 genomes]
rs12211922	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12212190	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12214435	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12214794	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12215263	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1329709	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329711	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17423748	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038765	0.82[EUR][1000 genomes]
rs2396379	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3997499	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55864280	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56337964	0.81[EUR][1000 genomes]
rs62436368	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62436369	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62436374	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62436375	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62436376	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62436395	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436396	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436436	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62438018	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62438863	0.82[EUR][1000 genomes]
rs62438864	0.82[EUR][1000 genomes]
rs62438867	0.82[EUR][1000 genomes]
rs62438877	0.80[EUR][1000 genomes]
rs6908606	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6909047	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6924185	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72867436	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72869118	0.82[EUR][1000 genomes]
rs72869127	0.82[EUR][1000 genomes]
rs9367210	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44919600-44943200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:44937400-44942400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:44937400-44942800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:44937800-44941800	Weak transcription	Fetal Heart	heart
5	chr6:44937800-44943400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:44938200-44943600	Weak transcription	Primary T cells from cord blood	blood
7	chr6:44938800-44943400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:44939800-44941000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:44939800-44942600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:44939800-44951200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:44940000-44940800	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr6:44940000-44941200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
13	chr6:44940000-44941200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:44940000-44941200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:44940200-44940800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:44940200-44941000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr6:44940200-44941000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:44940200-44942000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:44940200-44942000	ZNF genes & repeats	Dnd41	blood
20	chr6:44940600-44940800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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