Variant report

Variant	rs12202704
Chromosome Location	chr6:44819614-44819615
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44817728..44819933-chr6:44820094..44823058,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10456120	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484625	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484626	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948171	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10948172	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10948176	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948196	1.00[JPT][hapmap]
rs12190313	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191977	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12193264	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12194924	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12196188	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs12198016	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12198308	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12200892	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12202609	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12202698	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12208332	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208605	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs12209944	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12210292	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12211922	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12212190	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12214435	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214794	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12215095	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12215263	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12215971	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1329709	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs1329711	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs17423748	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3997499	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644056	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs529125	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55864280	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62436368	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436369	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436374	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436375	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436376	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62436395	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62436396	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62436411	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62437973	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62438018	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909047	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6924185	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72865924	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7349931	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs755	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs756	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7765371	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs857601	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs860741	0.86[CEU][hapmap]
rs9367210	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463042	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9463043	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9472365	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9472367	0.83[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44798400-44822800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:44808600-44821000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44817200-44820000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:44818000-44832200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:44818400-44823200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:44818400-44823400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:44818400-44823400	Weak transcription	HSMMtube	muscle
8	chr6:44818400-44825800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:44818400-44826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:44818800-44823400	Weak transcription	Fetal Stomach	stomach
11	chr6:44818800-44823600	Weak transcription	HSMM	muscle
12	chr6:44819400-44820800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:44819400-44823200	Weak transcription	Osteobl	bone
14	chr6:44819400-44823400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:44819600-44823000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:44819600-44823200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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