Variant report

Variant	rs12215263
Chromosome Location	chr6:44831364-44831365
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10456120	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10484627	1.00[YRI][hapmap]
rs10948171	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10948172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10948176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948185	1.00[YRI][hapmap]
rs10948192	0.91[YRI][hapmap]
rs11961316	1.00[CHB][hapmap]
rs12190313	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12191977	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12193264	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12194924	0.81[AMR][1000 genomes]
rs12196188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs12198016	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12198308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12200892	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12202609	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12202698	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12202704	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12208332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12208605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs12209944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12210292	1.00[CHB][hapmap]
rs12211922	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12212190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12214435	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12214794	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12215095	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12215971	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12525009	1.00[YRI][hapmap]
rs1329709	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs1329711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs1329714	0.83[YRI][hapmap]
rs17423748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1971482	0.84[YRI][hapmap]
rs2396372	1.00[YRI][hapmap]
rs3799973	0.92[YRI][hapmap]
rs3799976	1.00[YRI][hapmap]
rs3799977	1.00[YRI][hapmap]
rs3799979	1.00[YRI][hapmap]
rs3997499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4644056	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4711807	0.92[YRI][hapmap]
rs4714828	1.00[YRI][hapmap]
rs529125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55864280	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62436368	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436369	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436374	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62436375	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62436376	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62436395	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62436396	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62436411	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62437973	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62438018	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6909047	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6924185	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs72865924	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7349931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7765371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs857601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs860741	0.95[CEU][hapmap]
rs9367210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9463042	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9463043	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472365	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472367	0.82[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44818000-44832200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:44820400-44832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:44823800-44836600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:44824600-44833200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:44824600-44833200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:44826000-44831600	Weak transcription	Fetal Intestine Small	intestine
7	chr6:44827400-44833000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:44827400-44833200	Weak transcription	Primary T cells from cord blood	blood
9	chr6:44827600-44833000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:44828400-44837800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:44829600-44831400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr6:44830800-44831400	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:44831000-44832600	Enhancers	Fetal Intestine Large	intestine

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