Variant report

Variant	rs2396372
Chromosome Location	chr6:44966867-44966868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 284 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:268)

rs_ID	r²[population]
rs1023089	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1023090	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1023091	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs1028944	0.91[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1041332	0.90[ASW][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs1041333	0.95[ASN][1000 genomes]
rs10456119	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10456122	0.91[YRI][hapmap]
rs10484627	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10948176	1.00[YRI][hapmap]
rs10948183	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10948185	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10948186	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10948187	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs10948188	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs10948190	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs10948192	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs10948193	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948194	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10948197	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10948198	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10948201	0.83[YRI][hapmap]
rs1150806	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1159131	0.94[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs11964325	0.82[ASW][hapmap];0.80[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs11966936	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11967188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968042	0.84[EUR][1000 genomes]
rs12190261	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12190513	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs12191518	0.93[ASN][1000 genomes]
rs12191566	0.91[YRI][hapmap]
rs12193720	0.83[YRI][hapmap]
rs12193812	0.91[YRI][hapmap]
rs12196818	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12198376	0.82[YRI][hapmap]
rs12198904	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12205071	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12205860	0.91[YRI][hapmap]
rs12207620	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12208023	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12208339	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12208483	0.84[EUR][1000 genomes]
rs12209076	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209161	0.91[YRI][hapmap]
rs12212745	0.83[YRI][hapmap]
rs12213735	0.82[YRI][hapmap]
rs12214778	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12215263	1.00[YRI][hapmap]
rs12524069	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12525009	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12525773	0.86[ASN][1000 genomes]
rs12526649	0.83[JPT][hapmap]
rs12526711	0.84[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12526755	0.87[ASN][1000 genomes]
rs12527908	0.83[ASN][1000 genomes]
rs12528232	0.92[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12528762	0.83[JPT][hapmap]
rs12529490	0.83[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs12529522	0.89[CHD][hapmap];0.82[ASN][1000 genomes]
rs12529990	0.83[JPT][hapmap]
rs12530016	0.89[CHD][hapmap];0.81[ASN][1000 genomes]
rs12530207	0.84[CHD][hapmap];0.83[JPT][hapmap]
rs12661902	0.85[ASN][1000 genomes]
rs12662272	0.82[JPT][hapmap]
rs12663530	0.81[ASN][1000 genomes]
rs12663798	0.87[ASN][1000 genomes]
rs1284969	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1284972	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs1284973	0.84[EUR][1000 genomes]
rs1284975	0.84[EUR][1000 genomes]
rs1284982	0.82[ASW][hapmap];0.87[CEU][hapmap];0.92[GIH][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs1284983	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs1284986	0.83[JPT][hapmap]
rs1284987	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs1284988	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs1284992	0.84[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs1284999	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs1285004	0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs1285005	0.83[JPT][hapmap]
rs1285007	0.83[JPT][hapmap]
rs1285009	0.83[CHD][hapmap];0.83[JPT][hapmap]
rs1285011	0.84[CHD][hapmap];0.83[JPT][hapmap]
rs1285013	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1285014	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1285026	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs1285029	0.84[CHD][hapmap];0.83[JPT][hapmap]
rs1285033	0.83[JPT][hapmap]
rs1293598	0.88[ASN][1000 genomes]
rs1293600	0.83[ASN][1000 genomes]
rs13196587	0.98[ASN][1000 genomes]
rs13199289	0.81[ASN][1000 genomes]
rs13201942	0.92[CHD][hapmap];0.83[JPT][hapmap]
rs13202529	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13203495	0.97[ASN][1000 genomes]
rs13205113	0.83[JPT][hapmap]
rs13206526	0.92[CHD][hapmap]
rs13207575	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13209827	0.83[JPT][hapmap]
rs13211006	0.82[JPT][hapmap]
rs13211229	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13213412	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13215618	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs13216116	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs1324530	0.84[CHD][hapmap];0.83[JPT][hapmap]
rs1324532	0.84[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs1324535	0.84[CHD][hapmap];0.83[JPT][hapmap]
rs1329710	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.85[TSI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1329713	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1329714	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1329715	0.92[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs1329716	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1360195	0.92[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs1360197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1402599	0.89[CHD][hapmap]
rs1411148	0.82[ASW][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs1521355	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs1576382	0.98[ASN][1000 genomes]
rs1578676	0.94[ASN][1000 genomes]
rs1590864	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1629542	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs17339124	0.98[ASN][1000 genomes]
rs17422760	0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs17424547	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1748231	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1748233	0.83[JPT][hapmap]
rs1748234	0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs1748235	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs1748238	0.83[JPT][hapmap]
rs1748240	0.83[JPT][hapmap]
rs1748242	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1797145	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1831310	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1854547	0.98[ASN][1000 genomes]
rs1886345	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1937046	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs1937047	0.83[EUR][1000 genomes]
rs1971482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1980265	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs2038765	0.91[YRI][hapmap]
rs2186062	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs2396369	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2396370	0.98[ASN][1000 genomes]
rs2396371	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2396375	0.88[ASN][1000 genomes]
rs34286542	0.87[ASN][1000 genomes]
rs34808716	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34982599	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35103634	0.87[ASN][1000 genomes]
rs35357222	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35687006	0.92[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs35704584	0.87[ASN][1000 genomes]
rs35813980	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35908738	0.86[ASN][1000 genomes]
rs36105034	0.87[ASN][1000 genomes]
rs3778507	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3799965	0.89[CHD][hapmap]
rs3799967	0.94[CHB][hapmap]
rs3799968	0.89[CHB][hapmap];0.81[CHD][hapmap]
rs3799971	0.89[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs3799973	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.86[ASN][1000 genomes]
rs3799976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3799977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3799979	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3799981	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs3799984	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs3799986	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.80[TSI][hapmap];0.94[ASN][1000 genomes]
rs3799987	0.92[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs3823252	0.92[CHD][hapmap]
rs3846896	0.88[ASN][1000 genomes]
rs3957281	0.89[ASN][1000 genomes]
rs4398713	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.89[ASN][1000 genomes]
rs4412189	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4475320	0.87[ASN][1000 genomes]
rs4512220	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4711803	0.90[ASN][1000 genomes]
rs4711805	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4711807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711809	0.89[CHB][hapmap];0.83[CHD][hapmap];0.85[ASN][1000 genomes]
rs4714828	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4714829	0.87[ASN][1000 genomes]
rs4714830	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714832	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4714834	0.92[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4714836	0.90[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs472672	0.85[ASN][1000 genomes]
rs472673	0.83[ASN][1000 genomes]
rs494982	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs500773	0.90[ASN][1000 genomes]
rs524492	0.89[CHD][hapmap]
rs538801	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs542444	0.89[CHD][hapmap]
rs55893720	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588848	0.88[ASN][1000 genomes]
rs59945128	0.87[ASN][1000 genomes]
rs608941	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62438007	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs636845	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs6458414	0.87[ASN][1000 genomes]
rs6458415	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6458418	0.88[EUR][1000 genomes]
rs6458419	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6458423	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs67001335	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67911131	0.82[ASN][1000 genomes]
rs679713	0.94[ASN][1000 genomes]
rs6899378	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6899845	0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs6903576	0.87[ASN][1000 genomes]
rs6904015	0.89[CHB][hapmap]
rs6904584	0.83[ASN][1000 genomes]
rs6910294	0.95[CHB][hapmap]
rs6919161	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs6919485	0.97[ASN][1000 genomes]
rs6919998	0.91[YRI][hapmap]
rs6922660	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6922772	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6923436	0.83[EUR][1000 genomes]
rs6923519	0.88[ASN][1000 genomes]
rs6924185	0.91[YRI][hapmap]
rs6925017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6925467	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6936475	0.83[JPT][hapmap]
rs718112	0.90[ASN][1000 genomes]
rs7739928	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7740542	0.83[JPT][hapmap]
rs7742360	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7745506	0.82[JPT][hapmap]
rs7747642	0.88[ASN][1000 genomes]
rs7749865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754378	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs7754698	0.89[CHB][hapmap]
rs7758031	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7763421	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7763450	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs7764102	0.84[EUR][1000 genomes]
rs7775717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs865940	0.83[ASN][1000 genomes]
rs9296450	0.92[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9357464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9357469	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs9357470	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs9367210	1.00[YRI][hapmap]
rs9367211	0.89[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9367214	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9369514	0.89[CHB][hapmap]
rs9369516	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs9369529	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9381361	0.82[ASN][1000 genomes]
rs9381365	0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.80[TSI][hapmap]
rs9395049	0.95[CHB][hapmap]
rs9395051	0.89[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9395055	0.87[ASN][1000 genomes]
rs9395058	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9395065	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs9395066	0.95[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap]
rs9463054	0.97[ASN][1000 genomes]
rs9463055	0.96[ASN][1000 genomes]
rs9472376	0.89[CHD][hapmap]
rs9472407	0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9472409	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs9472411	0.98[ASN][1000 genomes]
rs9472414	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs9472416	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9472442	0.83[JPT][hapmap]
rs969211	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs976699	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9885796	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv2757164	chr6:44953758-44989519	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2396372	LOC100132354	cis	cerebellum	SCAN
rs2396372	SUPT3H	cis	multi-tissue	Pritchard
rs2396372	C6orf226	cis	cerebellum	SCAN
rs2396372	SUPT3H	cis	cerebellum	SCAN
rs2396372	SUPT3H	cis	parietal	SCAN
rs2396372	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44951200-44980800	Weak transcription	Aorta	Aorta
2	chr6:44955600-44968400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:44964600-44981400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:44964600-44983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:44965600-44978600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:44965800-44983400	Weak transcription	Primary B cells from cord blood	blood
7	chr6:44966000-44968600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:44966400-44993600	Weak transcription	HepG2	liver

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