Variant report

Variant	rs12525773
Chromosome Location	chr6:44913863-44913864
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 189 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs1023091	0.96[ASN][1000 genomes]
rs1028944	0.94[ASN][1000 genomes]
rs1041333	0.84[ASN][1000 genomes]
rs10456119	0.84[ASN][1000 genomes]
rs10484627	0.83[ASN][1000 genomes]
rs10948183	0.85[ASN][1000 genomes]
rs10948185	0.87[ASN][1000 genomes]
rs10948186	0.86[ASN][1000 genomes]
rs10948187	0.86[ASN][1000 genomes]
rs10948188	0.87[ASN][1000 genomes]
rs10948190	0.87[ASN][1000 genomes]
rs10948193	0.86[ASN][1000 genomes]
rs10948194	0.85[ASN][1000 genomes]
rs10948197	0.85[ASN][1000 genomes]
rs1150806	0.83[ASN][1000 genomes]
rs11967188	0.86[ASN][1000 genomes]
rs12190513	0.87[ASN][1000 genomes]
rs12191518	0.87[ASN][1000 genomes]
rs12196818	0.86[ASN][1000 genomes]
rs12198904	0.81[ASN][1000 genomes]
rs12207620	0.80[ASN][1000 genomes]
rs12209076	0.81[ASN][1000 genomes]
rs12214778	0.85[ASN][1000 genomes]
rs12524069	0.86[ASN][1000 genomes]
rs12525009	0.83[ASN][1000 genomes]
rs12526711	0.83[ASN][1000 genomes]
rs12526755	0.99[ASN][1000 genomes]
rs12527668	0.80[ASN][1000 genomes]
rs12527908	0.96[ASN][1000 genomes]
rs12528232	0.96[ASN][1000 genomes]
rs12528762	0.89[ASN][1000 genomes]
rs12529522	0.94[ASN][1000 genomes]
rs12530016	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12661902	0.97[ASN][1000 genomes]
rs12663530	0.93[ASN][1000 genomes]
rs12663798	0.99[ASN][1000 genomes]
rs1293598	0.82[ASN][1000 genomes]
rs13196587	0.87[ASN][1000 genomes]
rs13198471	0.80[ASN][1000 genomes]
rs13201942	0.89[ASN][1000 genomes]
rs13202672	0.87[ASN][1000 genomes]
rs13203495	0.86[ASN][1000 genomes]
rs13205113	0.89[ASN][1000 genomes]
rs13206526	0.83[ASN][1000 genomes]
rs13209827	0.87[ASN][1000 genomes]
rs13211006	0.80[ASN][1000 genomes]
rs13211229	0.87[ASN][1000 genomes]
rs13213412	0.81[ASN][1000 genomes]
rs13215618	0.82[ASN][1000 genomes]
rs13216116	0.87[ASN][1000 genomes]
rs13216967	0.91[ASN][1000 genomes]
rs1329710	0.84[ASN][1000 genomes]
rs1329715	0.99[ASN][1000 genomes]
rs1329716	0.85[ASN][1000 genomes]
rs1360195	0.99[ASN][1000 genomes]
rs1360197	0.83[ASN][1000 genomes]
rs1402599	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1521355	0.86[ASN][1000 genomes]
rs1576382	0.85[ASN][1000 genomes]
rs1578676	0.86[ASN][1000 genomes]
rs1590864	0.87[ASN][1000 genomes]
rs16869119	0.87[ASN][1000 genomes]
rs16872574	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17339124	0.87[ASN][1000 genomes]
rs17422760	0.83[ASN][1000 genomes]
rs17424547	0.81[ASN][1000 genomes]
rs1831310	0.83[ASN][1000 genomes]
rs1854547	0.87[ASN][1000 genomes]
rs1935549	0.86[ASN][1000 genomes]
rs1980265	0.86[ASN][1000 genomes]
rs2139863	0.87[ASN][1000 genomes]
rs2396369	0.87[ASN][1000 genomes]
rs2396370	0.87[ASN][1000 genomes]
rs2396371	0.87[ASN][1000 genomes]
rs2396372	0.86[ASN][1000 genomes]
rs2894599	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34152708	0.80[ASN][1000 genomes]
rs34243039	0.90[ASN][1000 genomes]
rs34286542	0.98[ASN][1000 genomes]
rs34776198	0.87[ASN][1000 genomes]
rs34808716	0.82[ASN][1000 genomes]
rs34817919	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35103634	0.99[ASN][1000 genomes]
rs35357222	0.87[ASN][1000 genomes]
rs35687006	0.98[ASN][1000 genomes]
rs35704584	0.99[ASN][1000 genomes]
rs35813980	0.86[ASN][1000 genomes]
rs35856781	0.90[ASN][1000 genomes]
rs35908738	0.98[ASN][1000 genomes]
rs36105034	0.98[ASN][1000 genomes]
rs3778507	0.87[ASN][1000 genomes]
rs3799965	0.87[ASN][1000 genomes]
rs3799966	0.86[ASN][1000 genomes]
rs3799969	0.87[ASN][1000 genomes]
rs3799970	0.87[ASN][1000 genomes]
rs3799972	0.89[ASN][1000 genomes]
rs3799974	0.90[ASN][1000 genomes]
rs3799976	0.82[ASN][1000 genomes]
rs3799977	0.81[ASN][1000 genomes]
rs3799979	0.81[ASN][1000 genomes]
rs3799981	0.84[ASN][1000 genomes]
rs3799984	0.84[ASN][1000 genomes]
rs3799986	0.86[ASN][1000 genomes]
rs3799987	0.99[ASN][1000 genomes]
rs3823252	0.87[ASN][1000 genomes]
rs3846896	0.82[ASN][1000 genomes]
rs3957281	0.83[ASN][1000 genomes]
rs4475320	0.99[ASN][1000 genomes]
rs4512220	0.97[ASN][1000 genomes]
rs4711803	0.84[ASN][1000 genomes]
rs4711805	0.83[ASN][1000 genomes]
rs4711807	0.87[ASN][1000 genomes]
rs4711809	0.96[ASN][1000 genomes]
rs4714825	0.86[ASN][1000 genomes]
rs4714827	0.90[ASN][1000 genomes]
rs4714828	0.80[ASN][1000 genomes]
rs4714829	0.99[ASN][1000 genomes]
rs4714830	0.86[ASN][1000 genomes]
rs4714832	0.83[ASN][1000 genomes]
rs4714834	0.96[ASN][1000 genomes]
rs494982	0.87[ASN][1000 genomes]
rs500773	0.83[ASN][1000 genomes]
rs524492	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs538801	0.82[ASN][1000 genomes]
rs542444	0.87[ASN][1000 genomes]
rs55893720	0.86[ASN][1000 genomes]
rs562016	0.86[ASN][1000 genomes]
rs588848	0.80[ASN][1000 genomes]
rs59945128	0.99[ASN][1000 genomes]
rs608941	0.83[ASN][1000 genomes]
rs62438007	0.81[ASN][1000 genomes]
rs636845	0.87[ASN][1000 genomes]
rs6458414	0.82[ASN][1000 genomes]
rs6458415	0.82[ASN][1000 genomes]
rs66642874	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67597621	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67911131	0.94[ASN][1000 genomes]
rs679713	0.86[ASN][1000 genomes]
rs6903576	0.80[ASN][1000 genomes]
rs6904584	0.96[ASN][1000 genomes]
rs6919161	0.94[ASN][1000 genomes]
rs6919485	0.86[ASN][1000 genomes]
rs6923519	0.82[ASN][1000 genomes]
rs6925017	0.85[ASN][1000 genomes]
rs718112	0.83[ASN][1000 genomes]
rs720988	0.87[ASN][1000 genomes]
rs720989	0.84[ASN][1000 genomes]
rs72664272	0.83[ASN][1000 genomes]
rs72664273	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72664274	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73443219	0.81[AFR][1000 genomes]
rs73443229	0.81[AFR][1000 genomes]
rs73443286	0.81[AFR][1000 genomes]
rs7747642	0.80[ASN][1000 genomes]
rs7749865	0.86[ASN][1000 genomes]
rs7754378	0.83[ASN][1000 genomes]
rs7763421	0.84[ASN][1000 genomes]
rs7769218	0.87[ASN][1000 genomes]
rs7775717	0.84[ASN][1000 genomes]
rs9296450	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357464	0.85[ASN][1000 genomes]
rs9367211	0.83[ASN][1000 genomes]
rs9369516	0.82[ASN][1000 genomes]
rs9395055	0.81[ASN][1000 genomes]
rs9463039	0.83[ASN][1000 genomes]
rs9463040	0.83[ASN][1000 genomes]
rs9463054	0.86[ASN][1000 genomes]
rs9463055	0.85[ASN][1000 genomes]
rs9472376	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9472407	0.87[ASN][1000 genomes]
rs9472409	0.87[ASN][1000 genomes]
rs9472411	0.87[ASN][1000 genomes]
rs9472414	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472416	0.86[ASN][1000 genomes]
rs976699	0.85[ASN][1000 genomes]
rs9885796	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44904400-44918800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:44909200-44914200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:44913000-44914600	Weak transcription	Ovary	ovary
4	chr6:44913200-44914600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:44913200-44914600	ZNF genes & repeats	Fetal Heart	heart
6	chr6:44913200-44914800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr6:44913200-44914800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:44913400-44914000	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr6:44913400-44914000	ZNF genes & repeats	HSMM	muscle
10	chr6:44913400-44914600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:44913400-44915000	ZNF genes & repeats	Dnd41	blood
12	chr6:44913400-44930000	Weak transcription	Pancreas	Pancrea
13	chr6:44913600-44928600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:44913800-44918200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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