Variant report

Variant	rs12663530
Chromosome Location	chr6:44847289-44847290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs1023091	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1028944	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10456119	0.84[ASN][1000 genomes]
rs10484627	0.83[ASN][1000 genomes]
rs10948183	0.82[ASN][1000 genomes]
rs10948185	0.82[ASN][1000 genomes]
rs10948186	0.81[ASN][1000 genomes]
rs10948188	0.81[ASN][1000 genomes]
rs10948190	0.81[ASN][1000 genomes]
rs10948193	0.81[ASN][1000 genomes]
rs10948197	0.80[ASN][1000 genomes]
rs11967188	0.81[ASN][1000 genomes]
rs12190513	0.81[ASN][1000 genomes]
rs12191518	0.81[ASN][1000 genomes]
rs12196818	0.81[ASN][1000 genomes]
rs12198904	0.83[ASN][1000 genomes]
rs12207620	0.87[ASN][1000 genomes]
rs12209076	0.83[ASN][1000 genomes]
rs12214778	0.81[ASN][1000 genomes]
rs12524069	0.81[ASN][1000 genomes]
rs12525009	0.83[ASN][1000 genomes]
rs12525773	0.93[ASN][1000 genomes]
rs12526649	0.81[EUR][1000 genomes]
rs12526711	0.83[ASN][1000 genomes]
rs12526755	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12527668	0.83[EUR][1000 genomes]
rs12527908	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12528232	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12528762	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12529522	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12529990	0.81[EUR][1000 genomes]
rs12530016	0.97[ASN][1000 genomes]
rs12661902	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12663798	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1293598	0.83[ASN][1000 genomes]
rs13196587	0.81[ASN][1000 genomes]
rs13198471	0.82[EUR][1000 genomes]
rs13201942	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13202672	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13205113	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13206526	0.85[ASN][1000 genomes]
rs13209827	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13211006	0.81[EUR][1000 genomes]
rs13211229	0.82[ASN][1000 genomes]
rs13213412	0.82[ASN][1000 genomes]
rs13216116	0.81[ASN][1000 genomes]
rs13216967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1329715	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1360195	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1402599	0.86[ASN][1000 genomes]
rs1521355	0.81[ASN][1000 genomes]
rs1578676	0.81[ASN][1000 genomes]
rs1590864	0.82[ASN][1000 genomes]
rs16869119	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs16872574	0.86[ASN][1000 genomes]
rs17339124	0.81[ASN][1000 genomes]
rs17422760	0.83[ASN][1000 genomes]
rs1854547	0.81[ASN][1000 genomes]
rs1935549	0.87[ASN][1000 genomes]
rs2139863	0.88[ASN][1000 genomes]
rs2396369	0.81[ASN][1000 genomes]
rs2396370	0.81[ASN][1000 genomes]
rs2396371	0.81[ASN][1000 genomes]
rs2396372	0.81[ASN][1000 genomes]
rs2894599	0.86[ASN][1000 genomes]
rs34152708	0.81[EUR][1000 genomes]
rs34243039	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs34251367	0.82[EUR][1000 genomes]
rs34286542	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34776198	0.88[ASN][1000 genomes]
rs34808716	0.84[ASN][1000 genomes]
rs34817919	0.86[ASN][1000 genomes]
rs35103634	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35134594	0.81[EUR][1000 genomes]
rs35357222	0.82[ASN][1000 genomes]
rs35687006	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35704584	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35813980	0.81[ASN][1000 genomes]
rs35856781	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs35908738	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36105034	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3778507	0.81[ASN][1000 genomes]
rs3799965	0.88[ASN][1000 genomes]
rs3799966	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3799969	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3799970	0.88[ASN][1000 genomes]
rs3799972	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3799974	0.91[ASN][1000 genomes]
rs3799976	0.83[ASN][1000 genomes]
rs3799977	0.84[ASN][1000 genomes]
rs3799979	0.87[ASN][1000 genomes]
rs3799981	0.83[ASN][1000 genomes]
rs3799986	0.81[ASN][1000 genomes]
rs3799987	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3823252	0.88[ASN][1000 genomes]
rs3846896	0.82[ASN][1000 genomes]
rs3857589	0.85[EUR][1000 genomes]
rs3957281	0.84[ASN][1000 genomes]
rs4475320	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4512220	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4711803	0.84[ASN][1000 genomes]
rs4711805	0.86[ASN][1000 genomes]
rs4711807	0.82[ASN][1000 genomes]
rs4711809	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4714825	0.87[ASN][1000 genomes]
rs4714827	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4714828	0.87[ASN][1000 genomes]
rs4714829	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4714830	0.81[ASN][1000 genomes]
rs4714834	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4714838	0.80[EUR][1000 genomes]
rs472672	0.80[ASN][1000 genomes]
rs472673	0.81[ASN][1000 genomes]
rs494982	0.81[ASN][1000 genomes]
rs500773	0.84[ASN][1000 genomes]
rs524492	0.85[ASN][1000 genomes]
rs538801	0.82[ASN][1000 genomes]
rs542444	0.88[ASN][1000 genomes]
rs55893720	0.81[ASN][1000 genomes]
rs562016	0.87[ASN][1000 genomes]
rs588848	0.82[ASN][1000 genomes]
rs59945128	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs608941	0.83[ASN][1000 genomes]
rs62438007	0.87[ASN][1000 genomes]
rs636845	0.81[ASN][1000 genomes]
rs6458414	0.84[ASN][1000 genomes]
rs66642874	0.86[ASN][1000 genomes]
rs67597621	0.85[ASN][1000 genomes]
rs67911131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs679713	0.81[ASN][1000 genomes]
rs6903576	0.82[ASN][1000 genomes]
rs6904584	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6919161	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923519	0.83[ASN][1000 genomes]
rs6925017	0.80[ASN][1000 genomes]
rs718112	0.85[ASN][1000 genomes]
rs720988	0.88[ASN][1000 genomes]
rs720989	0.86[ASN][1000 genomes]
rs72664272	0.84[ASN][1000 genomes]
rs72664273	0.86[ASN][1000 genomes]
rs72664274	0.86[ASN][1000 genomes]
rs7745506	0.82[EUR][1000 genomes]
rs7747642	0.87[ASN][1000 genomes]
rs7749865	0.81[ASN][1000 genomes]
rs7754378	0.85[ASN][1000 genomes]
rs7763421	0.83[ASN][1000 genomes]
rs7769218	0.88[ASN][1000 genomes]
rs9296450	0.92[ASN][1000 genomes]
rs9367211	0.83[ASN][1000 genomes]
rs9369516	0.82[ASN][1000 genomes]
rs9395055	0.83[ASN][1000 genomes]
rs9463039	0.85[ASN][1000 genomes]
rs9463040	0.85[ASN][1000 genomes]
rs9472376	0.86[ASN][1000 genomes]
rs9472407	0.81[ASN][1000 genomes]
rs9472409	0.81[ASN][1000 genomes]
rs9472411	0.81[ASN][1000 genomes]
rs9472414	0.93[ASN][1000 genomes]
rs9885796	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44833600-44849400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:44838200-44848800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:44838400-44854200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:44844200-44847800	Weak transcription	Dnd41	blood
5	chr6:44845200-44847800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:44846400-44847600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:44846400-44848000	Enhancers	HepG2	liver

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