Variant report

Variant	rs4714825
Chromosome Location	chr6:44761546-44761547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10484627	0.83[JPT][hapmap]
rs12190136	0.80[ASN][1000 genomes]
rs12525773	0.86[ASN][1000 genomes]
rs12526711	0.83[JPT][hapmap]
rs12526755	0.87[ASN][1000 genomes]
rs12527908	0.90[ASN][1000 genomes]
rs12529522	0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12530016	0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12661902	0.85[ASN][1000 genomes]
rs12663530	0.87[ASN][1000 genomes]
rs12663798	0.87[ASN][1000 genomes]
rs1293457	0.80[ASN][1000 genomes]
rs1293467	0.80[ASN][1000 genomes]
rs13199289	0.81[ASN][1000 genomes]
rs13202672	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13206526	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13216967	0.85[ASN][1000 genomes]
rs1329715	0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1360195	0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1402599	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1418435	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1557143	0.80[ASN][1000 genomes]
rs16869119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16872574	0.99[ASN][1000 genomes]
rs17422760	0.83[JPT][hapmap]
rs1891411	0.80[ASN][1000 genomes]
rs1891412	0.80[ASN][1000 genomes]
rs1935549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139863	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs227835	0.80[AMR][1000 genomes]
rs227839	0.81[AMR][1000 genomes]
rs227840	0.80[AMR][1000 genomes]
rs227844	0.84[AMR][1000 genomes]
rs227845	0.83[AMR][1000 genomes]
rs227852	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs227853	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs227857	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2894599	0.99[ASN][1000 genomes]
rs34243039	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34286542	0.86[ASN][1000 genomes]
rs34577161	0.85[AMR][1000 genomes]
rs34776198	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34817919	0.99[ASN][1000 genomes]
rs35103634	0.87[ASN][1000 genomes]
rs35687006	0.94[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs35704584	0.87[ASN][1000 genomes]
rs35856781	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35908738	0.86[ASN][1000 genomes]
rs36105034	0.86[ASN][1000 genomes]
rs3799965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3799966	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3799967	0.88[JPT][hapmap]
rs3799969	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3799970	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3799971	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs3799972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3799973	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs3799974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3799976	0.84[JPT][hapmap]
rs3799977	0.83[JPT][hapmap]
rs3799979	0.83[JPT][hapmap]
rs3799984	0.84[JPT][hapmap]
rs3799987	0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs3823252	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3997503	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4475320	0.87[ASN][1000 genomes]
rs4512220	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4711797	0.84[AMR][1000 genomes]
rs4711799	0.80[ASN][1000 genomes]
rs4714812	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes]
rs4714827	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4714828	0.83[JPT][hapmap]
rs4714829	0.87[ASN][1000 genomes]
rs524492	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs542444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs562016	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59945128	0.87[ASN][1000 genomes]
rs609643	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs609699	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66642874	0.99[ASN][1000 genomes]
rs67597621	0.97[ASN][1000 genomes]
rs67911131	0.88[ASN][1000 genomes]
rs6904015	0.89[JPT][hapmap]
rs6904584	0.90[ASN][1000 genomes]
rs6910294	0.80[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs6910749	0.80[ASN][1000 genomes]
rs6919161	0.94[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs720988	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs720989	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72664272	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72664273	0.98[ASN][1000 genomes]
rs72664274	0.99[ASN][1000 genomes]
rs7746032	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7754378	0.83[JPT][hapmap]
rs7754698	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs7769218	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs929614	0.80[ASN][1000 genomes]
rs9296450	0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9357459	0.80[ASN][1000 genomes]
rs9367211	0.82[JPT][hapmap]
rs9369512	0.80[ASN][1000 genomes]
rs9369514	0.83[JPT][hapmap]
rs9369516	0.83[JPT][hapmap]
rs9395051	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs9463017	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9463039	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9463040	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9472331	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes]
rs9472335	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9472376	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9472407	0.83[JPT][hapmap]
rs9472414	0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9885796	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4714825	SUPT3H	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44756200-44761600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:44761400-44762000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:44761400-44762600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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