Variant report

Variant	rs12190136
Chromosome Location	chr6:44767072-44767073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44753701..44756475-chr6:44765560..44767104,2	K562	blood:

Extended variants
information (count: 151 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10456119	0.81[ASN][1000 genomes]
rs10484627	0.84[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10948183	0.92[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs10948185	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs10948186	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs10948187	0.95[CHB][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs10948188	0.92[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap]
rs10948190	0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs10948194	0.95[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs11967188	0.88[CHB][hapmap]
rs12190513	0.92[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs12191518	0.80[ASN][1000 genomes]
rs12192367	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12196818	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs12207620	0.80[ASN][1000 genomes]
rs12209076	0.82[ASN][1000 genomes]
rs12214778	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs12525009	0.84[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs12526711	0.82[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12529522	0.88[JPT][hapmap]
rs12530016	0.88[JPT][hapmap]
rs1293457	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293467	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1293598	0.81[ASN][1000 genomes]
rs13199289	0.82[ASN][1000 genomes]
rs13206526	0.88[JPT][hapmap]
rs13213412	0.81[ASN][1000 genomes]
rs13215618	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs13216116	0.92[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap]
rs1329715	0.82[JPT][hapmap]
rs1329716	0.95[CHB][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs1342370	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1360195	0.82[JPT][hapmap]
rs1360197	0.89[CHB][hapmap]
rs1402599	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1418434	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1521355	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs1557143	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869119	0.88[JPT][hapmap]
rs16872574	0.81[ASN][1000 genomes]
rs17422760	0.92[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.81[ASN][1000 genomes]
rs1891411	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891412	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935549	0.80[ASN][1000 genomes]
rs1935551	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1980265	0.95[CHB][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap]
rs2038555	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2038556	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2038557	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040032	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2139863	0.88[JPT][hapmap]
rs227849	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs227850	0.81[TSI][hapmap]
rs227852	0.84[CHD][hapmap]
rs227853	0.84[CHD][hapmap]
rs2396369	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs2396371	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs2396372	0.89[CHB][hapmap]
rs2894599	0.81[ASN][1000 genomes]
rs34808716	0.81[ASN][1000 genomes]
rs34817919	0.81[ASN][1000 genomes]
rs35687006	0.82[JPT][hapmap]
rs3778507	0.95[CHB][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.80[ASN][1000 genomes]
rs3799965	0.88[JPT][hapmap]
rs3799967	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3799968	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3799971	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3799972	0.88[JPT][hapmap]
rs3799973	0.88[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs3799974	0.88[JPT][hapmap]
rs3799976	0.89[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs3799977	0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs3799979	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs3799981	0.92[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs3799984	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs3799986	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs3799987	0.82[JPT][hapmap]
rs3823252	0.88[JPT][hapmap]
rs3846896	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3957281	0.81[ASN][1000 genomes]
rs4512220	0.82[JPT][hapmap]
rs4711798	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4711799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711803	0.82[ASN][1000 genomes]
rs4711805	0.81[ASN][1000 genomes]
rs4711807	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs4714812	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs4714819	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4714820	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4714821	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4714822	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4714825	0.80[ASN][1000 genomes]
rs4714828	0.89[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs4714830	0.89[CHB][hapmap]
rs472672	0.80[ASN][1000 genomes]
rs494982	0.95[CHB][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs500773	0.82[ASN][1000 genomes]
rs524492	0.88[JPT][hapmap]
rs538801	0.89[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs542444	0.88[JPT][hapmap]
rs562016	0.80[ASN][1000 genomes]
rs588848	0.81[ASN][1000 genomes]
rs59881382	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs608941	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs636845	0.95[CHB][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs6458415	0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs66642874	0.81[ASN][1000 genomes]
rs6903576	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6904015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6910294	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6910749	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919161	0.82[JPT][hapmap]
rs6923519	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6925017	0.88[CHB][hapmap]
rs71564699	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs718112	0.81[ASN][1000 genomes]
rs72664273	0.80[ASN][1000 genomes]
rs72664274	0.81[ASN][1000 genomes]
rs764396	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs764397	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7747642	0.80[ASN][1000 genomes]
rs7749865	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs7754378	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.80[TSI][hapmap];0.81[ASN][1000 genomes]
rs7754698	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7763421	0.92[CEU][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7769218	0.86[JPT][hapmap]
rs929614	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296450	0.84[CHB][hapmap]
rs9349303	0.83[TSI][hapmap]
rs9357459	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9357464	0.94[CHB][hapmap]
rs9367208	0.87[ASN][1000 genomes]
rs9367211	0.89[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.82[ASN][1000 genomes]
rs9369512	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9369513	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9369514	1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9369516	0.95[CHB][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9395049	0.95[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs9395051	1.00[CHB][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9395055	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9472331	0.82[JPT][hapmap]
rs9472336	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9472339	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9472360	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9472376	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs9472383	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9472407	0.91[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs9472409	0.92[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap]
rs9472414	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs9472416	0.92[CEU][hapmap];0.94[CHB][hapmap]
rs976699	0.94[CHB][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs12190136	SUPT3H	cis	lymphoblastoid	seeQTL
rs12190136	SUPT3H	cis	cerebellum	SCAN
rs12190136	C6orf226	cis	cerebellum	SCAN
rs12190136	SUPT3H	cis	multi-tissue	Pritchard

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44761800-44776200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:44762000-44768000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:44765000-44767200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:44765200-44768800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:44766000-44768000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44766200-44768000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:44766200-44768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:44766400-44767200	Enhancers	Colon Smooth Muscle	Colon
9	chr6:44766800-44768000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:44767000-44767200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:44767000-44767200	Enhancers	Fetal Kidney	kidney
12	chr6:44767000-44767200	Enhancers	Lung	lung
13	chr6:44767000-44767200	Enhancers	Pancreas	Pancrea
14	chr6:44767000-44767600	Bivalent Enhancer	HepG2	liver
15	chr6:44767000-44769200	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links