Variant report

Variant	rs7747642
Chromosome Location	chr6:44844374-44844375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 168 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs1041333	0.87[ASN][1000 genomes]
rs10456119	0.96[ASN][1000 genomes]
rs10484627	0.95[ASN][1000 genomes]
rs10948183	0.94[ASN][1000 genomes]
rs10948185	0.94[ASN][1000 genomes]
rs10948186	0.94[ASN][1000 genomes]
rs10948187	0.88[ASN][1000 genomes]
rs10948188	0.87[ASN][1000 genomes]
rs10948190	0.88[ASN][1000 genomes]
rs10948193	0.88[ASN][1000 genomes]
rs10948194	0.87[ASN][1000 genomes]
rs10948197	0.87[ASN][1000 genomes]
rs1150806	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11524119	0.83[ASN][1000 genomes]
rs11967188	0.88[ASN][1000 genomes]
rs12190136	0.80[ASN][1000 genomes]
rs12190513	0.87[ASN][1000 genomes]
rs12191518	0.94[ASN][1000 genomes]
rs12196818	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12197442	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12198904	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12200412	0.87[ASN][1000 genomes]
rs12207620	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12209076	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12214778	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12524069	0.93[ASN][1000 genomes]
rs12525009	0.95[ASN][1000 genomes]
rs12525773	0.80[ASN][1000 genomes]
rs12526711	0.95[ASN][1000 genomes]
rs12526755	0.81[ASN][1000 genomes]
rs12527908	0.84[ASN][1000 genomes]
rs12529522	0.84[ASN][1000 genomes]
rs12530016	0.83[ASN][1000 genomes]
rs12663530	0.87[ASN][1000 genomes]
rs12663798	0.81[ASN][1000 genomes]
rs1293457	0.80[ASN][1000 genomes]
rs1293467	0.80[ASN][1000 genomes]
rs1293598	0.97[ASN][1000 genomes]
rs1293600	0.91[ASN][1000 genomes]
rs13196587	0.88[ASN][1000 genomes]
rs13199289	0.86[ASN][1000 genomes]
rs13201202	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13202529	0.82[ASN][1000 genomes]
rs13203495	0.87[ASN][1000 genomes]
rs13211229	0.89[ASN][1000 genomes]
rs13213412	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13215618	0.80[ASN][1000 genomes]
rs13216116	0.88[ASN][1000 genomes]
rs13216967	0.81[ASN][1000 genomes]
rs1329710	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1329713	0.81[ASN][1000 genomes]
rs1329714	0.81[ASN][1000 genomes]
rs1329715	0.81[ASN][1000 genomes]
rs1329716	0.87[ASN][1000 genomes]
rs1360195	0.81[ASN][1000 genomes]
rs1360197	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1521355	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1557143	0.80[ASN][1000 genomes]
rs1576382	0.87[ASN][1000 genomes]
rs1578676	0.93[ASN][1000 genomes]
rs1590864	0.94[ASN][1000 genomes]
rs17339124	0.88[ASN][1000 genomes]
rs17422760	0.95[ASN][1000 genomes]
rs17424547	0.84[ASN][1000 genomes]
rs1831310	0.85[ASN][1000 genomes]
rs1854547	0.89[ASN][1000 genomes]
rs1891411	0.80[ASN][1000 genomes]
rs1891412	0.80[ASN][1000 genomes]
rs1971482	0.81[ASN][1000 genomes]
rs1980265	0.88[ASN][1000 genomes]
rs2396369	0.89[ASN][1000 genomes]
rs2396370	0.89[ASN][1000 genomes]
rs2396371	0.89[ASN][1000 genomes]
rs2396372	0.88[ASN][1000 genomes]
rs2396375	0.81[ASN][1000 genomes]
rs34286542	0.80[ASN][1000 genomes]
rs34808716	0.96[ASN][1000 genomes]
rs34982599	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35103634	0.81[ASN][1000 genomes]
rs35357222	0.89[ASN][1000 genomes]
rs35687006	0.80[ASN][1000 genomes]
rs35704584	0.81[ASN][1000 genomes]
rs35813980	0.88[ASN][1000 genomes]
rs35908738	0.80[ASN][1000 genomes]
rs36105034	0.80[ASN][1000 genomes]
rs3778507	0.94[ASN][1000 genomes]
rs3799967	0.81[ASN][1000 genomes]
rs3799971	0.91[ASN][1000 genomes]
rs3799973	0.91[ASN][1000 genomes]
rs3799976	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3799977	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3799979	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3799981	0.94[ASN][1000 genomes]
rs3799984	0.91[ASN][1000 genomes]
rs3799986	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3799987	0.81[ASN][1000 genomes]
rs3846896	0.95[ASN][1000 genomes]
rs3957281	0.96[ASN][1000 genomes]
rs4398713	0.82[ASN][1000 genomes]
rs4475320	0.81[ASN][1000 genomes]
rs4711799	0.80[ASN][1000 genomes]
rs4711803	0.96[ASN][1000 genomes]
rs4711805	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4711807	0.89[ASN][1000 genomes]
rs4714828	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4714829	0.81[ASN][1000 genomes]
rs4714830	0.88[ASN][1000 genomes]
rs4714832	0.85[ASN][1000 genomes]
rs472672	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs472673	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs494982	0.89[ASN][1000 genomes]
rs500773	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs538801	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55893720	0.88[ASN][1000 genomes]
rs567054	0.88[ASN][1000 genomes]
rs588848	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59945128	0.81[ASN][1000 genomes]
rs608941	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62438007	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62438011	0.84[ASN][1000 genomes]
rs634789	0.81[AMR][1000 genomes]
rs636845	0.89[ASN][1000 genomes]
rs6458414	0.93[ASN][1000 genomes]
rs6458415	0.92[ASN][1000 genomes]
rs67001335	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67911131	0.83[ASN][1000 genomes]
rs679713	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903576	0.95[ASN][1000 genomes]
rs6904584	0.84[ASN][1000 genomes]
rs6910294	0.82[ASN][1000 genomes]
rs6910749	0.80[ASN][1000 genomes]
rs6919161	0.83[ASN][1000 genomes]
rs6919485	0.88[ASN][1000 genomes]
rs6923519	0.97[ASN][1000 genomes]
rs6925017	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925467	0.82[ASN][1000 genomes]
rs718112	0.97[ASN][1000 genomes]
rs7742360	0.82[ASN][1000 genomes]
rs7749865	0.88[ASN][1000 genomes]
rs7754378	0.97[ASN][1000 genomes]
rs7754698	0.80[ASN][1000 genomes]
rs7763421	0.94[ASN][1000 genomes]
rs7775717	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs865940	0.82[EUR][1000 genomes]
rs929614	0.80[ASN][1000 genomes]
rs9296448	0.80[ASN][1000 genomes]
rs9357459	0.80[ASN][1000 genomes]
rs9357464	0.87[ASN][1000 genomes]
rs9367208	0.87[ASN][1000 genomes]
rs9367211	0.96[ASN][1000 genomes]
rs9369512	0.80[ASN][1000 genomes]
rs9369514	0.81[ASN][1000 genomes]
rs9369516	0.95[ASN][1000 genomes]
rs9369529	0.81[ASN][1000 genomes]
rs9395051	0.91[ASN][1000 genomes]
rs9395055	0.96[ASN][1000 genomes]
rs9395058	0.80[ASN][1000 genomes]
rs9463054	0.88[ASN][1000 genomes]
rs9463055	0.86[ASN][1000 genomes]
rs9472383	0.83[ASN][1000 genomes]
rs9472407	0.93[ASN][1000 genomes]
rs9472409	0.87[ASN][1000 genomes]
rs9472411	0.88[ASN][1000 genomes]
rs9472414	0.80[ASN][1000 genomes]
rs9472416	0.87[ASN][1000 genomes]
rs976699	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384988	chr6:44840124-44845422	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7747642	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44833600-44849400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:44838200-44848800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:44838400-44854200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:44844200-44847800	Weak transcription	Dnd41	blood

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