Variant report

Variant	rs9472383
Chromosome Location	chr6:44817260-44817261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44816641..44819151-chr6:44821596..44823845,2	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1041333	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10456119	0.84[ASN][1000 genomes]
rs10484627	0.83[ASN][1000 genomes]
rs10948183	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10948185	0.83[ASN][1000 genomes]
rs10948186	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10948187	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10948190	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10948194	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10948195	0.85[EUR][1000 genomes]
rs1150806	0.82[ASN][1000 genomes]
rs12190136	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12191518	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12198904	0.83[ASN][1000 genomes]
rs12207620	0.82[ASN][1000 genomes]
rs12209076	0.86[ASN][1000 genomes]
rs12524069	0.83[ASN][1000 genomes]
rs12525009	0.83[ASN][1000 genomes]
rs12526711	0.83[ASN][1000 genomes]
rs1293457	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1293467	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1293598	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1293600	0.83[AMR][1000 genomes]
rs13199289	0.85[ASN][1000 genomes]
rs13213412	0.82[ASN][1000 genomes]
rs1329716	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1360196	0.84[EUR][1000 genomes]
rs1557143	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1576382	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1578676	0.83[ASN][1000 genomes]
rs1590864	0.83[ASN][1000 genomes]
rs17422760	0.85[ASN][1000 genomes]
rs1854547	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1891411	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1891412	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1935551	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1980265	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2145826	0.82[EUR][1000 genomes]
rs2396369	0.81[ASN][1000 genomes]
rs2396370	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2396371	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34808716	0.84[ASN][1000 genomes]
rs3778507	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3799967	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3799968	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3799971	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3799973	0.90[ASN][1000 genomes]
rs3799976	0.86[ASN][1000 genomes]
rs3799977	0.86[ASN][1000 genomes]
rs3799978	0.87[EUR][1000 genomes]
rs3799979	0.83[ASN][1000 genomes]
rs3799981	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3799984	0.83[ASN][1000 genomes]
rs3799986	0.84[ASN][1000 genomes]
rs3846896	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3957281	0.84[ASN][1000 genomes]
rs4711799	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4711803	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4711805	0.84[ASN][1000 genomes]
rs4714821	0.81[ASN][1000 genomes]
rs4714828	0.82[ASN][1000 genomes]
rs472672	0.83[ASN][1000 genomes]
rs494982	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs500773	0.86[ASN][1000 genomes]
rs538801	0.83[ASN][1000 genomes]
rs567054	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57020561	0.87[EUR][1000 genomes]
rs588848	0.83[ASN][1000 genomes]
rs608941	0.85[ASN][1000 genomes]
rs62438007	0.83[ASN][1000 genomes]
rs636845	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6458414	0.81[ASN][1000 genomes]
rs6458415	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs679713	0.84[ASN][1000 genomes]
rs6903576	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6904015	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6910294	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6910749	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6919485	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6923519	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6925017	0.80[ASN][1000 genomes]
rs6940547	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs718112	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7747642	0.83[ASN][1000 genomes]
rs7754378	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7754698	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7763421	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs929614	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9296448	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9349303	0.92[EUR][1000 genomes]
rs9357459	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357464	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9367208	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9367211	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9369512	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9369513	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9369514	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9369515	0.92[EUR][1000 genomes]
rs9369516	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9369519	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9369523	0.87[EUR][1000 genomes]
rs9395049	0.81[ASN][1000 genomes]
rs9395051	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9395055	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9463054	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9463055	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9472403	0.88[EUR][1000 genomes]
rs9472407	0.84[ASN][1000 genomes]
rs9472411	0.81[AMR][1000 genomes]
rs9472418	0.82[EUR][1000 genomes]
rs976699	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9472383	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44798400-44822800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:44808600-44821000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:44817200-44820000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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