Variant report

Variant	rs34808716
Chromosome Location	chr13:64258011-64258012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 209 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs1023091	0.80[ASN][1000 genomes]
rs1041333	0.87[ASN][1000 genomes]
rs10456119	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10484627	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10948183	0.96[ASN][1000 genomes]
rs10948185	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10948186	0.95[ASN][1000 genomes]
rs10948187	0.89[ASN][1000 genomes]
rs10948188	0.90[ASN][1000 genomes]
rs10948190	0.90[ASN][1000 genomes]
rs10948192	0.90[EUR][1000 genomes]
rs10948193	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10948194	0.88[ASN][1000 genomes]
rs10948197	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1150806	0.92[ASN][1000 genomes]
rs11524119	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1159131	0.82[ASN][1000 genomes]
rs11967188	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12190136	0.81[ASN][1000 genomes]
rs12190513	0.90[ASN][1000 genomes]
rs12191518	0.94[ASN][1000 genomes]
rs12196818	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12197442	0.89[ASN][1000 genomes]
rs12198904	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12200412	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12207620	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12208339	0.80[ASN][1000 genomes]
rs12209076	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214778	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12524069	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12525009	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12525773	0.82[ASN][1000 genomes]
rs12526711	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12526755	0.83[ASN][1000 genomes]
rs12527908	0.86[ASN][1000 genomes]
rs12528232	0.80[ASN][1000 genomes]
rs12529522	0.85[ASN][1000 genomes]
rs12530016	0.84[ASN][1000 genomes]
rs12661902	0.82[ASN][1000 genomes]
rs12663530	0.84[ASN][1000 genomes]
rs12663798	0.83[ASN][1000 genomes]
rs1293457	0.81[ASN][1000 genomes]
rs1293467	0.81[ASN][1000 genomes]
rs1293598	0.98[ASN][1000 genomes]
rs1293600	0.90[ASN][1000 genomes]
rs13196587	0.90[ASN][1000 genomes]
rs13199289	0.89[ASN][1000 genomes]
rs13201202	0.82[ASN][1000 genomes]
rs13202529	0.83[ASN][1000 genomes]
rs13203495	0.89[ASN][1000 genomes]
rs13211229	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13213412	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13215618	0.82[ASN][1000 genomes]
rs13216116	0.90[ASN][1000 genomes]
rs13216967	0.82[ASN][1000 genomes]
rs1329710	0.89[ASN][1000 genomes]
rs1329713	0.82[ASN][1000 genomes]
rs1329714	0.83[ASN][1000 genomes]
rs1329715	0.83[ASN][1000 genomes]
rs1329716	0.88[ASN][1000 genomes]
rs1360195	0.83[ASN][1000 genomes]
rs1360197	0.87[ASN][1000 genomes]
rs1521355	0.90[ASN][1000 genomes]
rs1557143	0.81[ASN][1000 genomes]
rs1576382	0.88[ASN][1000 genomes]
rs1578676	0.95[ASN][1000 genomes]
rs1590864	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17339124	0.90[ASN][1000 genomes]
rs17422760	0.98[ASN][1000 genomes]
rs17424547	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1831310	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1854547	0.90[ASN][1000 genomes]
rs1891411	0.81[ASN][1000 genomes]
rs1891412	0.81[ASN][1000 genomes]
rs1971482	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1980265	0.89[ASN][1000 genomes]
rs2396369	0.90[ASN][1000 genomes]
rs2396370	0.90[ASN][1000 genomes]
rs2396371	0.90[ASN][1000 genomes]
rs2396372	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2396375	0.82[ASN][1000 genomes]
rs34243039	0.81[ASN][1000 genomes]
rs34286542	0.82[ASN][1000 genomes]
rs34982599	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35103634	0.83[ASN][1000 genomes]
rs35357222	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35687006	0.82[ASN][1000 genomes]
rs35704584	0.83[ASN][1000 genomes]
rs35813980	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35856781	0.81[ASN][1000 genomes]
rs35908738	0.82[ASN][1000 genomes]
rs36105034	0.82[ASN][1000 genomes]
rs3778507	0.94[ASN][1000 genomes]
rs3799967	0.82[ASN][1000 genomes]
rs3799971	0.92[ASN][1000 genomes]
rs3799972	0.80[ASN][1000 genomes]
rs3799973	0.93[ASN][1000 genomes]
rs3799974	0.81[ASN][1000 genomes]
rs3799976	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3799977	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3799979	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3799981	0.97[ASN][1000 genomes]
rs3799984	0.94[ASN][1000 genomes]
rs3799986	0.95[ASN][1000 genomes]
rs3799987	0.83[ASN][1000 genomes]
rs3846896	0.96[ASN][1000 genomes]
rs3957281	0.98[ASN][1000 genomes]
rs4398713	0.83[ASN][1000 genomes]
rs4475320	0.83[ASN][1000 genomes]
rs4512220	0.82[ASN][1000 genomes]
rs4711799	0.81[ASN][1000 genomes]
rs4711803	0.98[ASN][1000 genomes]
rs4711805	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711807	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4711809	0.80[ASN][1000 genomes]
rs4714827	0.81[ASN][1000 genomes]
rs4714828	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4714829	0.83[ASN][1000 genomes]
rs4714830	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4714832	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4714834	0.80[ASN][1000 genomes]
rs472672	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs472673	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs494982	0.90[ASN][1000 genomes]
rs500773	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs538801	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55893720	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs567054	0.89[ASN][1000 genomes]
rs588848	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59945128	0.83[ASN][1000 genomes]
rs608941	0.98[ASN][1000 genomes]
rs62438007	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62438011	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs636845	0.90[ASN][1000 genomes]
rs6458414	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6458415	0.93[ASN][1000 genomes]
rs67001335	0.81[ASN][1000 genomes]
rs67911131	0.85[ASN][1000 genomes]
rs679713	0.95[ASN][1000 genomes]
rs6903576	0.94[ASN][1000 genomes]
rs6904584	0.86[ASN][1000 genomes]
rs6910294	0.83[ASN][1000 genomes]
rs6910749	0.81[ASN][1000 genomes]
rs6919161	0.85[ASN][1000 genomes]
rs6919485	0.89[ASN][1000 genomes]
rs6923519	0.96[ASN][1000 genomes]
rs6925017	0.90[ASN][1000 genomes]
rs6925467	0.83[ASN][1000 genomes]
rs718112	0.98[ASN][1000 genomes]
rs7742360	0.83[ASN][1000 genomes]
rs7747642	0.96[ASN][1000 genomes]
rs7749865	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7754378	0.98[ASN][1000 genomes]
rs7754698	0.81[ASN][1000 genomes]
rs7763421	0.97[ASN][1000 genomes]
rs7775717	0.89[ASN][1000 genomes]
rs929614	0.81[ASN][1000 genomes]
rs9296450	0.81[ASN][1000 genomes]
rs9357459	0.81[ASN][1000 genomes]
rs9357464	0.88[ASN][1000 genomes]
rs9367208	0.87[ASN][1000 genomes]
rs9367211	0.97[ASN][1000 genomes]
rs9369512	0.81[ASN][1000 genomes]
rs9369514	0.82[ASN][1000 genomes]
rs9369516	0.96[ASN][1000 genomes]
rs9369529	0.83[ASN][1000 genomes]
rs9395049	0.82[ASN][1000 genomes]
rs9395051	0.92[ASN][1000 genomes]
rs9395055	0.95[ASN][1000 genomes]
rs9395058	0.81[ASN][1000 genomes]
rs9463054	0.89[ASN][1000 genomes]
rs9463055	0.88[ASN][1000 genomes]
rs9472383	0.84[ASN][1000 genomes]
rs9472407	0.95[ASN][1000 genomes]
rs9472409	0.90[ASN][1000 genomes]
rs9472411	0.90[ASN][1000 genomes]
rs9472414	0.82[ASN][1000 genomes]
rs9472416	0.89[ASN][1000 genomes]
rs976699	0.88[ASN][1000 genomes]
rs9885796	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039661	chr13:63736333-64287558	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv541801	chr13:63736333-64287558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv917273	chr13:63998155-64344377	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv900312	chr13:64050360-64270259	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900313	chr13:64050360-64279866	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1035413	chr13:64115552-64348712	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv900314	chr13:64133015-64357838	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1048708	chr13:64133698-64382448	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv541805	chr13:64133698-64382448	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv1040762	chr13:64173948-64307519	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1040459	chr13:64173948-64321869	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1050067	chr13:64173948-64405310	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1044017	chr13:64179828-64307519	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1048830	chr13:64180438-64311124	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv541806	chr13:64180438-64311124	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv524746	chr13:64184453-64343819	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
18	esv1798536	chr13:64224859-64269467	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv1799588	chr13:64224859-64270259	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1803925	chr13:64224859-64270259	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv1795006	chr13:64224859-64287383	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv2756457	chr13:64244499-64497199	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
23	nsv1047128	chr13:64247650-64362136	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
24	nsv869979	chr13:64248924-64382388	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
25	nsv561951	chr13:64253222-64314600	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
26	nsv1037962	chr13:64254844-64370795	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
27	nsv1037077	chr13:64254844-64381524	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
28	esv2761233	chr13:64254856-64405322	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
29	nsv1046214	chr13:64255381-64367990	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34808716	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64255200-64259000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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