Variant report

Variant	rs12661902
Chromosome Location	chr6:44947283-44947284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 215 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs1023091	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1028944	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1041333	0.82[ASN][1000 genomes]
rs10456119	0.83[ASN][1000 genomes]
rs10484627	0.83[ASN][1000 genomes]
rs10948183	0.83[ASN][1000 genomes]
rs10948185	0.86[ASN][1000 genomes]
rs10948186	0.85[ASN][1000 genomes]
rs10948187	0.84[ASN][1000 genomes]
rs10948188	0.84[ASN][1000 genomes]
rs10948190	0.85[ASN][1000 genomes]
rs10948193	0.85[ASN][1000 genomes]
rs10948194	0.83[ASN][1000 genomes]
rs10948197	0.84[ASN][1000 genomes]
rs1150806	0.82[ASN][1000 genomes]
rs11967188	0.85[ASN][1000 genomes]
rs12190513	0.84[ASN][1000 genomes]
rs12191518	0.84[ASN][1000 genomes]
rs12196818	0.85[ASN][1000 genomes]
rs12198904	0.81[ASN][1000 genomes]
rs12209076	0.80[ASN][1000 genomes]
rs12214778	0.84[ASN][1000 genomes]
rs12524069	0.85[ASN][1000 genomes]
rs12525009	0.83[ASN][1000 genomes]
rs12525773	0.97[ASN][1000 genomes]
rs12526649	0.85[EUR][1000 genomes]
rs12526711	0.83[ASN][1000 genomes]
rs12526755	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12527668	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12527908	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12528232	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12528762	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529522	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12529990	0.85[EUR][1000 genomes]
rs12530016	0.92[ASN][1000 genomes]
rs12530207	0.86[EUR][1000 genomes]
rs12662272	0.82[EUR][1000 genomes]
rs12663530	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12663798	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1284979	0.81[EUR][1000 genomes]
rs1284989	0.86[EUR][1000 genomes]
rs1284993	0.86[EUR][1000 genomes]
rs1284995	0.81[EUR][1000 genomes]
rs1284999	0.86[EUR][1000 genomes]
rs1285000	0.81[EUR][1000 genomes]
rs1285005	0.82[EUR][1000 genomes]
rs1285006	0.82[EUR][1000 genomes]
rs1285008	0.82[EUR][1000 genomes]
rs1285009	0.81[EUR][1000 genomes]
rs1285010	0.82[EUR][1000 genomes]
rs1285011	0.82[EUR][1000 genomes]
rs1285020	0.82[EUR][1000 genomes]
rs1285021	0.82[EUR][1000 genomes]
rs1285025	0.82[EUR][1000 genomes]
rs1285028	0.82[EUR][1000 genomes]
rs1285029	0.82[EUR][1000 genomes]
rs1285030	0.82[EUR][1000 genomes]
rs13193495	0.80[AMR][1000 genomes]
rs13196587	0.85[ASN][1000 genomes]
rs13198471	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13201942	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13202672	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13203495	0.84[ASN][1000 genomes]
rs13205113	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13206526	0.82[ASN][1000 genomes]
rs13209827	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13211006	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13211229	0.86[ASN][1000 genomes]
rs13213412	0.80[ASN][1000 genomes]
rs13216116	0.85[ASN][1000 genomes]
rs13216967	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1324535	0.82[EUR][1000 genomes]
rs1329710	0.84[ASN][1000 genomes]
rs1329715	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1329716	0.83[ASN][1000 genomes]
rs1360195	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1360197	0.82[ASN][1000 genomes]
rs1402599	0.84[ASN][1000 genomes]
rs1521355	0.85[ASN][1000 genomes]
rs1576382	0.83[ASN][1000 genomes]
rs1578676	0.85[ASN][1000 genomes]
rs1590864	0.86[ASN][1000 genomes]
rs16869119	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16872574	0.84[ASN][1000 genomes]
rs17339124	0.85[ASN][1000 genomes]
rs17422760	0.81[ASN][1000 genomes]
rs17424547	0.82[ASN][1000 genomes]
rs1797148	0.86[EUR][1000 genomes]
rs1797149	0.86[EUR][1000 genomes]
rs1797156	0.85[EUR][1000 genomes]
rs1831310	0.82[ASN][1000 genomes]
rs1854547	0.84[ASN][1000 genomes]
rs1935549	0.85[ASN][1000 genomes]
rs1980265	0.84[ASN][1000 genomes]
rs2139863	0.86[ASN][1000 genomes]
rs2396369	0.84[ASN][1000 genomes]
rs2396370	0.84[ASN][1000 genomes]
rs2396371	0.84[ASN][1000 genomes]
rs2396372	0.85[ASN][1000 genomes]
rs2396381	0.86[EUR][1000 genomes]
rs2894599	0.84[ASN][1000 genomes]
rs34152708	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34243039	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs34251367	0.86[EUR][1000 genomes]
rs34286542	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34776198	0.86[ASN][1000 genomes]
rs34808716	0.82[ASN][1000 genomes]
rs34817919	0.84[ASN][1000 genomes]
rs35103634	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35134594	0.85[EUR][1000 genomes]
rs35357222	0.86[ASN][1000 genomes]
rs35687006	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35704584	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35811020	0.82[EUR][1000 genomes]
rs35813980	0.85[ASN][1000 genomes]
rs35856781	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35908738	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36105034	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3778507	0.84[ASN][1000 genomes]
rs3799965	0.86[ASN][1000 genomes]
rs3799966	0.85[ASN][1000 genomes]
rs3799969	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3799970	0.86[ASN][1000 genomes]
rs3799972	0.88[ASN][1000 genomes]
rs3799974	0.89[ASN][1000 genomes]
rs3799976	0.81[ASN][1000 genomes]
rs3799977	0.80[ASN][1000 genomes]
rs3799979	0.80[ASN][1000 genomes]
rs3799981	0.82[ASN][1000 genomes]
rs3799984	0.82[ASN][1000 genomes]
rs3799986	0.85[ASN][1000 genomes]
rs3799987	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823252	0.86[ASN][1000 genomes]
rs3857589	0.85[EUR][1000 genomes]
rs3957281	0.80[ASN][1000 genomes]
rs4475320	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4512220	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711803	0.82[ASN][1000 genomes]
rs4711805	0.82[ASN][1000 genomes]
rs4711807	0.86[ASN][1000 genomes]
rs4711809	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4714825	0.85[ASN][1000 genomes]
rs4714827	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4714829	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714830	0.85[ASN][1000 genomes]
rs4714832	0.82[ASN][1000 genomes]
rs4714834	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4714838	0.84[EUR][1000 genomes]
rs494982	0.84[ASN][1000 genomes]
rs500773	0.82[ASN][1000 genomes]
rs524492	0.82[ASN][1000 genomes]
rs538801	0.81[ASN][1000 genomes]
rs542444	0.86[ASN][1000 genomes]
rs55893720	0.85[ASN][1000 genomes]
rs562016	0.85[ASN][1000 genomes]
rs59945128	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs608941	0.83[ASN][1000 genomes]
rs62438007	0.80[ASN][1000 genomes]
rs636845	0.84[ASN][1000 genomes]
rs6458414	0.81[ASN][1000 genomes]
rs6458415	0.80[ASN][1000 genomes]
rs66642874	0.84[ASN][1000 genomes]
rs67597621	0.83[ASN][1000 genomes]
rs67911131	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs679713	0.85[ASN][1000 genomes]
rs6904584	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6917594	0.82[EUR][1000 genomes]
rs6919161	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6919485	0.84[ASN][1000 genomes]
rs6925017	0.84[ASN][1000 genomes]
rs718112	0.81[ASN][1000 genomes]
rs720988	0.86[ASN][1000 genomes]
rs720989	0.83[ASN][1000 genomes]
rs72664272	0.82[ASN][1000 genomes]
rs72664273	0.83[ASN][1000 genomes]
rs72664274	0.84[ASN][1000 genomes]
rs73449282	0.82[EUR][1000 genomes]
rs7745506	0.86[EUR][1000 genomes]
rs7749865	0.85[ASN][1000 genomes]
rs7754378	0.81[ASN][1000 genomes]
rs7763421	0.82[ASN][1000 genomes]
rs7769218	0.86[ASN][1000 genomes]
rs7775717	0.84[ASN][1000 genomes]
rs9296450	0.96[ASN][1000 genomes]
rs9357464	0.83[ASN][1000 genomes]
rs9367211	0.80[ASN][1000 genomes]
rs9463039	0.82[ASN][1000 genomes]
rs9463040	0.82[ASN][1000 genomes]
rs9463054	0.84[ASN][1000 genomes]
rs9463055	0.83[ASN][1000 genomes]
rs9463069	0.86[EUR][1000 genomes]
rs9463070	0.81[EUR][1000 genomes]
rs9472376	0.84[ASN][1000 genomes]
rs9472407	0.85[ASN][1000 genomes]
rs9472409	0.84[ASN][1000 genomes]
rs9472411	0.85[ASN][1000 genomes]
rs9472414	0.97[ASN][1000 genomes]
rs9472416	0.84[ASN][1000 genomes]
rs9472442	0.82[EUR][1000 genomes]
rs976699	0.83[ASN][1000 genomes]
rs9885796	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44939800-44951200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:44940800-44957000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:44946600-44955000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:44946600-44955000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:44947000-44948400	Enhancers	Fetal Heart	heart
6	chr6:44947200-44947400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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