Variant report

Variant	rs1285029
Chromosome Location	chr6:45122247-45122248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45120420..45122464-chr6:45122631..45125594,2	K562	blood:
2	chr6:45117043..45119503-chr6:45122120..45124121,2	K562	blood:
3	chr6:45119653..45122627-chr6:45134013..45136661,2	MCF-7	breast:

Extended variants
information (count: 318 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:308)

rs_ID	r²[population]
rs1023090	0.89[JPT][hapmap]
rs1023091	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1028944	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs1041332	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1080415	0.89[JPT][hapmap]
rs10807318	0.80[ASN][1000 genomes]
rs10948188	0.81[CHD][hapmap];0.84[JPT][hapmap]
rs10948190	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs10948194	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs10948197	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs10948198	0.89[JPT][hapmap]
rs10948222	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs10948225	0.82[ASN][1000 genomes]
rs10948227	0.82[ASN][1000 genomes]
rs10948228	0.82[ASN][1000 genomes]
rs10948230	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1159131	0.84[JPT][hapmap]
rs11964325	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs11966936	0.89[JPT][hapmap]
rs11967188	0.82[JPT][hapmap]
rs12204678	0.84[ASN][1000 genomes]
rs12205071	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs12205274	0.89[JPT][hapmap]
rs12208023	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs12214778	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs12524270	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12525603	0.82[ASN][1000 genomes]
rs12526462	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12526484	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs12526649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12526755	0.84[EUR][1000 genomes]
rs12526807	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12527586	0.82[ASN][1000 genomes]
rs12527668	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12527743	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12528232	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs12528762	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12529295	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12529490	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs12529907	1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12529946	0.86[CHD][hapmap];0.89[JPT][hapmap]
rs12529990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12530207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12660412	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12661902	0.82[EUR][1000 genomes]
rs12662272	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662664	0.82[ASN][1000 genomes]
rs12662685	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs12663469	0.83[ASN][1000 genomes]
rs12663798	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1284955	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1284961	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1284962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1284964	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1284965	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1284966	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1284967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1284969	0.89[JPT][hapmap]
rs1284972	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1284973	0.85[ASN][1000 genomes]
rs1284975	0.85[ASN][1000 genomes]
rs1284979	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1284986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1284987	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1284988	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1284989	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1284990	1.00[YRI][hapmap]
rs1284992	0.91[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1284993	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1284995	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1284999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1285000	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285002	1.00[YRI][hapmap]
rs1285003	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1285004	0.89[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1285005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1285006	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1285007	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1285008	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1285009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1285010	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1285011	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1285013	0.88[JPT][hapmap]
rs1285014	0.89[JPT][hapmap]
rs1285019	0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1285020	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1285021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1285022	0.86[ASN][1000 genomes]
rs1285023	0.86[ASN][1000 genomes]
rs1285024	1.00[YRI][hapmap]
rs1285025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1285026	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1285027	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1285028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1285030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1285031	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1285033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1290386	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1300126	0.85[ASN][1000 genomes]
rs13198471	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13201942	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13205113	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13209827	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13211006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13215618	0.89[JPT][hapmap]
rs13216116	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs1324530	0.84[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324532	0.86[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1324535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324537	0.85[ASN][1000 genomes]
rs1329710	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs1329713	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs1329714	0.87[JPT][hapmap]
rs1329716	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs1359336	0.83[ASN][1000 genomes]
rs1360195	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs1360197	0.82[JPT][hapmap]
rs1406848	0.83[ASN][1000 genomes]
rs1411148	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1521355	0.89[JPT][hapmap]
rs1629542	0.89[JPT][hapmap]
rs16872990	1.00[YRI][hapmap]
rs16873257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16873345	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs16873348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16873364	0.84[ASN][1000 genomes]
rs16873366	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17424547	0.89[JPT][hapmap]
rs1748231	0.89[JPT][hapmap]
rs1748233	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1748234	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1748235	0.89[JPT][hapmap]
rs1748236	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1748238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1748240	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1748242	0.89[JPT][hapmap]
rs1797145	0.89[JPT][hapmap]
rs1797148	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1797149	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1797156	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1797159	0.82[ASN][1000 genomes]
rs1852985	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1853652	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1886345	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1937046	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1971482	0.89[JPT][hapmap]
rs1980265	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs2024786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2024787	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2057552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2057553	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2093901	0.81[ASN][1000 genomes]
rs2093903	0.81[ASN][1000 genomes]
rs2186062	0.89[JPT][hapmap]
rs2295296	0.83[ASN][1000 genomes]
rs2396369	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs2396371	0.89[JPT][hapmap]
rs2396372	0.84[CHD][hapmap];0.83[JPT][hapmap]
rs2396381	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2396425	0.89[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2396426	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2763134	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2815263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28360524	0.82[ASN][1000 genomes]
rs34152708	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34167737	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34251367	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34286542	0.84[EUR][1000 genomes]
rs34677014	0.82[ASN][1000 genomes]
rs35134594	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35687006	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs35811020	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35908738	0.84[EUR][1000 genomes]
rs3799987	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs3923353	0.89[JPT][hapmap]
rs4072928	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs4236086	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4312985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4339452	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4341001	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4373351	0.86[JPT][hapmap]
rs4398713	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs4401652	0.82[ASN][1000 genomes]
rs4412189	0.89[JPT][hapmap]
rs4441951	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4446571	0.89[JPT][hapmap]
rs4475320	0.84[EUR][1000 genomes]
rs4512220	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4521586	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4521587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4590263	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.82[ASN][1000 genomes]
rs4711809	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs4711813	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4711814	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4714829	0.84[EUR][1000 genomes]
rs4714830	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs4714834	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs4714836	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs4714838	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4714842	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4714846	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4714847	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs4714848	0.89[JPT][hapmap]
rs4714850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs494982	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs55959525	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56175185	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56243649	0.82[ASN][1000 genomes]
rs59945128	0.85[EUR][1000 genomes]
rs59983488	0.81[ASN][1000 genomes]
rs60346641	0.82[ASN][1000 genomes]
rs60826731	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs636845	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs6458419	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs6458420	0.86[ASN][1000 genomes]
rs6458423	0.89[JPT][hapmap]
rs6458425	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6458427	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6458428	0.81[ASN][1000 genomes]
rs6458429	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6458430	0.81[ASN][1000 genomes]
rs6458432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6458433	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6458434	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6458435	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6458440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6899378	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs6899763	0.89[JPT][hapmap]
rs6899845	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs6901161	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6901786	0.89[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6905396	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6905959	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6909856	1.00[YRI][hapmap]
rs6917352	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6917594	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919847	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs6922660	0.89[JPT][hapmap]
rs6922772	0.89[JPT][hapmap]
rs6925017	0.87[JPT][hapmap]
rs6925467	0.89[JPT][hapmap]
rs6926638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6932926	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6934594	0.89[JPT][hapmap]
rs6936475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6938177	0.89[JPT][hapmap]
rs6938316	0.80[ASN][1000 genomes]
rs6938592	0.94[ASN][1000 genomes]
rs6940983	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941169	0.83[ASN][1000 genomes]
rs73449282	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73735337	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73735338	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73735354	0.82[ASN][1000 genomes]
rs73735357	0.82[ASN][1000 genomes]
rs73735369	0.82[ASN][1000 genomes]
rs73735378	0.82[ASN][1000 genomes]
rs7451423	0.89[JPT][hapmap]
rs7738526	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7739928	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs7740542	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7742360	0.89[JPT][hapmap]
rs7745506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7750380	0.83[ASN][1000 genomes]
rs7757282	0.89[JPT][hapmap]
rs7760112	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs7763450	0.89[JPT][hapmap]
rs7775717	0.83[JPT][hapmap]
rs927658	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9296450	0.89[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs9296452	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9296453	0.89[JPT][hapmap]
rs9296455	0.89[JPT][hapmap]
rs9349313	0.86[ASN][1000 genomes]
rs9349315	0.81[ASN][1000 genomes]
rs9357464	0.83[JPT][hapmap]
rs9357469	0.89[JPT][hapmap]
rs9357470	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9357480	0.89[JPT][hapmap]
rs9357484	0.89[JPT][hapmap]
rs9367214	0.89[JPT][hapmap]
rs9369529	0.89[JPT][hapmap]
rs9369534	0.83[ASN][1000 genomes]
rs9369549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9369558	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs9381364	0.83[ASN][1000 genomes]
rs9381365	0.89[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs9381366	0.86[ASN][1000 genomes]
rs9381373	0.89[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9395065	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs9395066	0.86[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs9395081	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9395095	0.83[JPT][hapmap]
rs9463069	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9463070	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9463076	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs9463081	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs9472409	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs9472414	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9472416	0.83[JPT][hapmap]
rs9472442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472451	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs9472453	1.00[ASW][hapmap];0.80[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs964452	0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs967588	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs969211	0.89[JPT][hapmap]
rs976699	0.82[JPT][hapmap]
rs988147	0.89[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1285029	SUPT3H	cis	lymphoblastoid	seeQTL
rs1285029	SUPT3H	cis	Lymphoblastoid	GTEx
rs1285029	SUPT3H	cis	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45121800-45122600	Genic enhancers	Dnd41	blood
2	chr6:45122000-45122400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:45122000-45125000	Enhancers	Primary T cells from cord blood	blood
4	chr6:45122200-45122600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:45122200-45123400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:45122200-45124200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:45122200-45125000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:45122200-45125000	Enhancers	Primary T helper cells PMA-I stimulated	--

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Variant report

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