Variant report

Variant	rs12528232
Chromosome Location	chr6:44982593-44982594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44974489..44977160-chr6:44980461..44983338,2	K562	blood:

Extended variants
information (count: 291 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:275)

rs_ID	r²[population]
rs1023090	0.89[JPT][hapmap]
rs1023091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1041332	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs1041333	0.81[ASN][1000 genomes]
rs10456119	0.82[ASN][1000 genomes]
rs10484627	0.86[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs10948183	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs10948185	0.92[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10948186	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10948187	0.89[CHD][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs10948188	0.89[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs10948190	0.89[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10948193	0.85[ASN][1000 genomes]
rs10948194	0.89[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs10948197	0.89[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs10948198	0.89[JPT][hapmap]
rs1150806	0.81[ASN][1000 genomes]
rs1159131	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs11964325	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs11966936	0.89[JPT][hapmap]
rs11967188	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs12190513	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12191518	0.83[ASN][1000 genomes]
rs12196818	0.87[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12205071	0.89[JPT][hapmap]
rs12208023	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs12214778	0.89[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12524069	0.83[ASN][1000 genomes]
rs12525009	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs12525773	0.96[ASN][1000 genomes]
rs12526649	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12526711	0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs12526755	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12527668	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12527908	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12528762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12529490	0.89[JPT][hapmap]
rs12529522	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12529990	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12530016	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs12530207	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs12661902	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12662272	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12663530	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12663798	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1284955	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1284961	0.89[JPT][hapmap]
rs1284962	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1284964	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs1284965	0.89[JPT][hapmap]
rs1284967	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1284969	0.89[JPT][hapmap]
rs1284972	0.89[JPT][hapmap]
rs1284979	0.81[EUR][1000 genomes]
rs1284986	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1284987	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs1284988	0.89[JPT][hapmap]
rs1284989	0.86[EUR][1000 genomes]
rs1284992	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs1284993	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1284995	0.81[EUR][1000 genomes]
rs1284999	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1285000	0.81[EUR][1000 genomes]
rs1285003	0.80[EUR][1000 genomes]
rs1285004	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs1285005	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1285006	0.82[EUR][1000 genomes]
rs1285007	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1285008	0.82[EUR][1000 genomes]
rs1285009	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs1285010	0.82[EUR][1000 genomes]
rs1285011	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1285013	0.88[JPT][hapmap]
rs1285014	0.89[JPT][hapmap]
rs1285019	0.81[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap]
rs1285020	0.82[EUR][1000 genomes]
rs1285021	0.82[EUR][1000 genomes]
rs1285025	0.82[EUR][1000 genomes]
rs1285026	0.89[JPT][hapmap]
rs1285028	0.82[EUR][1000 genomes]
rs1285029	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1285030	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs1285033	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1290386	0.89[JPT][hapmap]
rs13196587	0.84[ASN][1000 genomes]
rs13198471	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13201942	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13202529	0.81[ASN][1000 genomes]
rs13202672	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13203495	0.82[ASN][1000 genomes]
rs13205113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13206526	0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs13209827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13211006	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13211229	0.84[ASN][1000 genomes]
rs13215618	0.89[JPT][hapmap]
rs13216116	0.89[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs13216967	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1324530	0.80[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs1324532	0.89[JPT][hapmap]
rs1324535	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1329710	0.89[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs1329713	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1329714	0.80[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1329715	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1329716	0.92[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1360195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1360197	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1402599	0.88[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs1411148	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs1521355	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1576382	0.83[ASN][1000 genomes]
rs1578676	0.84[ASN][1000 genomes]
rs1590864	0.84[ASN][1000 genomes]
rs1629542	0.89[JPT][hapmap]
rs16869119	0.94[CHB][hapmap];0.88[JPT][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs16873257	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs17339124	0.84[ASN][1000 genomes]
rs17422760	0.86[CHD][hapmap];0.83[JPT][hapmap]
rs17424547	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1748231	0.89[JPT][hapmap]
rs1748233	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1748234	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs1748235	0.89[JPT][hapmap]
rs1748238	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1748240	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1748242	0.89[JPT][hapmap]
rs1797145	0.89[JPT][hapmap]
rs1797148	0.86[EUR][1000 genomes]
rs1797149	0.86[EUR][1000 genomes]
rs1797156	0.85[EUR][1000 genomes]
rs1831310	0.87[ASN][1000 genomes]
rs1854547	0.83[ASN][1000 genomes]
rs1886345	0.94[JPT][hapmap]
rs1937046	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs1971482	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1980265	0.89[CHD][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2139863	0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs2186062	0.89[JPT][hapmap]
rs2396369	0.89[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2396370	0.83[ASN][1000 genomes]
rs2396371	0.84[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2396372	0.92[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2396381	0.86[EUR][1000 genomes]
rs2396425	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs2815263	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs34152708	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34243039	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs34251367	0.86[EUR][1000 genomes]
rs34286542	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34808716	0.80[ASN][1000 genomes]
rs35103634	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35134594	0.85[EUR][1000 genomes]
rs35357222	0.84[ASN][1000 genomes]
rs35687006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35704584	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35811020	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35813980	0.85[ASN][1000 genomes]
rs35856781	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35908738	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36105034	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3778507	0.89[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs3799965	0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs3799966	0.83[ASN][1000 genomes]
rs3799967	0.83[CHB][hapmap]
rs3799969	0.84[ASN][1000 genomes]
rs3799970	0.84[ASN][1000 genomes]
rs3799972	0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs3799973	0.83[CHB][hapmap]
rs3799974	0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs3799976	0.83[JPT][hapmap]
rs3799977	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs3799979	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs3799981	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs3799984	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs3799986	0.89[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs3799987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3823252	0.94[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs3857589	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4398713	0.89[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs4412189	0.89[JPT][hapmap]
rs4475320	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4512220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711803	0.80[ASN][1000 genomes]
rs4711805	0.80[ASN][1000 genomes]
rs4711807	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs4711809	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714827	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4714828	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs4714829	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4714830	0.89[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4714832	0.87[ASN][1000 genomes]
rs4714834	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714836	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs4714838	0.86[EUR][1000 genomes]
rs494982	0.89[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs500773	0.80[ASN][1000 genomes]
rs524492	0.88[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs538801	0.89[JPT][hapmap]
rs542444	0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs55893720	0.85[ASN][1000 genomes]
rs562016	0.83[ASN][1000 genomes]
rs59945128	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs608941	0.89[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs636845	0.89[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs6458415	0.89[JPT][hapmap]
rs6458419	0.89[JPT][hapmap]
rs6458423	0.89[JPT][hapmap]
rs6458425	0.89[JPT][hapmap]
rs6458427	0.89[JPT][hapmap]
rs67597621	0.81[ASN][1000 genomes]
rs67911131	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs679713	0.84[ASN][1000 genomes]
rs6899378	0.89[JPT][hapmap]
rs6899845	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs6904015	0.84[CHB][hapmap]
rs6904584	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905396	0.89[JPT][hapmap]
rs6910294	0.84[CHB][hapmap]
rs6917594	0.82[EUR][1000 genomes]
rs6919161	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919485	0.82[ASN][1000 genomes]
rs6922660	0.89[JPT][hapmap]
rs6922772	0.89[JPT][hapmap]
rs6925017	0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6925467	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6936475	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs72664273	0.82[ASN][1000 genomes]
rs72664274	0.83[ASN][1000 genomes]
rs73449282	0.82[EUR][1000 genomes]
rs7738526	0.89[JPT][hapmap]
rs7739928	0.94[JPT][hapmap]
rs7740542	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7742360	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7745506	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7749865	0.84[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7754378	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs7763421	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7763450	0.89[JPT][hapmap]
rs7769218	0.93[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7775717	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs927658	0.89[JPT][hapmap]
rs9296450	0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs9357464	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs9357469	0.89[JPT][hapmap]
rs9357470	0.89[JPT][hapmap]
rs9367211	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs9367214	0.89[JPT][hapmap]
rs9369516	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs9369529	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9381365	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs9381373	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs9395049	0.84[CHB][hapmap]
rs9395051	0.89[CHD][hapmap]
rs9395058	0.80[ASN][1000 genomes]
rs9395065	0.89[JPT][hapmap]
rs9395066	0.84[JPT][hapmap]
rs9463054	0.82[ASN][1000 genomes]
rs9463055	0.82[ASN][1000 genomes]
rs9463069	0.86[EUR][1000 genomes]
rs9463070	0.81[EUR][1000 genomes]
rs9463076	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs9472376	0.88[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs9472407	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs9472409	0.89[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs9472411	0.84[ASN][1000 genomes]
rs9472414	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9472416	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9472442	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs964452	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs969211	0.89[JPT][hapmap]
rs976699	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs988147	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs9885796	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv462938	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv470817	chr6:44909515-45008779	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv603007	chr6:44909515-45008779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv2757164	chr6:44953758-44989519	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12528232	SUPT3H	cis	lymphoblastoid	seeQTL
rs12528232	SUPT3H	cis	multi-tissue	Pritchard

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44964600-44983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:44965800-44983400	Weak transcription	Primary B cells from cord blood	blood
3	chr6:44966400-44993600	Weak transcription	HepG2	liver
4	chr6:44970800-44988600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:44970800-44989000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:44971400-44988800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:44972000-44983800	Weak transcription	Adipose Nuclei	Adipose
8	chr6:44974800-45004600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:44975000-44983800	Weak transcription	Brain Anterior Caudate	brain
10	chr6:44977200-44988800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:44977600-44993800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:44978200-44982800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:44978600-44982600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:44978600-44988600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:44979000-44983200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:44979000-44983400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:44979000-44983600	Weak transcription	Fetal Brain Male	brain
18	chr6:44979200-44983600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:44979400-44984000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:44980000-44982600	Weak transcription	Left Ventricle	heart
21	chr6:44980200-44982600	Weak transcription	Placenta	Placenta
22	chr6:44980200-44982600	Weak transcription	Fetal Thymus	thymus
23	chr6:44980400-44982600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:44980400-44982800	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:44980600-44983000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:44980600-44989000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:44980800-44982600	Strong transcription	Primary hematopoietic stem cells	blood
28	chr6:44980800-44983000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:44980800-44983600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:44981000-44982600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:44981000-44983200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:44981000-44983200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:44981000-44983400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:44981200-44983200	Weak transcription	Brain Angular Gyrus	brain
35	chr6:44981400-44983000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:44981600-44983000	Weak transcription	Ovary	ovary
37	chr6:44981600-44983200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:44981600-44983200	Weak transcription	Fetal Intestine Large	intestine
39	chr6:44981600-44983400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:44981600-44983800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:44981600-44994800	Weak transcription	Aorta	Aorta
42	chr6:44981600-44994800	Weak transcription	Pancreas	Pancrea
43	chr6:44981800-44983400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:44981800-44988200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:44981800-44988800	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:44982200-44983800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:44982200-44987200	Weak transcription	Dnd41	blood

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