Variant report

Variant	rs1411148
Chromosome Location	chr6:45043618-45043619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 279 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:262)

rs_ID	r²[population]
rs1023089	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1023090	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1023091	0.89[JPT][hapmap]
rs1028944	0.89[JPT][hapmap]
rs1041332	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10484627	0.82[ASW][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs1080415	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10807318	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10807319	0.85[ASN][1000 genomes]
rs10807320	0.83[ASN][1000 genomes]
rs10948183	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10948185	0.82[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs10948186	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10948187	0.90[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs10948188	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs10948190	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs10948192	0.84[JPT][hapmap]
rs10948194	0.90[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap]
rs10948197	0.82[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.80[TSI][hapmap]
rs10948198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10948222	0.80[ASN][1000 genomes]
rs1159131	0.83[CHD][hapmap];0.94[JPT][hapmap]
rs11964325	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap]
rs11966936	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11967188	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs11968042	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12190261	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12190513	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12196818	0.82[ASW][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.80[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap]
rs12204678	0.88[ASN][1000 genomes]
rs12205071	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12205274	0.80[ASN][1000 genomes]
rs12208023	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12208483	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12214778	0.82[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.80[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap]
rs12525009	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12526649	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs12526711	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs12528232	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs12528762	0.89[JPT][hapmap]
rs12529490	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12529522	0.84[JPT][hapmap]
rs12529990	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs12530016	0.84[JPT][hapmap]
rs12530207	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs12662272	0.88[JPT][hapmap]
rs1284955	0.89[JPT][hapmap]
rs1284961	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1284962	0.89[JPT][hapmap]
rs1284964	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1284965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1284967	0.89[JPT][hapmap]
rs1284969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1284972	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1284973	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1284975	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1284980	0.86[AMR][1000 genomes]
rs1284982	1.00[ASW][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes]
rs1284983	0.89[AMR][1000 genomes]
rs1284986	0.89[JPT][hapmap]
rs1284987	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap]
rs1284988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1284989	0.80[ASN][1000 genomes]
rs1284992	0.83[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1284999	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs1285004	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1285005	0.89[JPT][hapmap]
rs1285007	0.89[JPT][hapmap]
rs1285009	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1285011	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1285013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1285014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1285019	0.81[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.80[MEX][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1285022	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1285023	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1285026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1285029	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1285033	0.89[JPT][hapmap]
rs1290386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1300126	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1304168	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13198471	0.82[ASN][1000 genomes]
rs13201942	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs13202529	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13205113	0.89[JPT][hapmap]
rs13207575	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13209827	0.89[JPT][hapmap]
rs13211006	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs13215618	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs13216116	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs1324530	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1324531	0.85[ASN][1000 genomes]
rs1324532	0.83[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1324535	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs1324537	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324540	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1329710	0.82[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1329713	0.90[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1329714	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1329715	0.89[JPT][hapmap]
rs1329716	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs1359336	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1360195	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs1360197	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1521355	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1581777	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1629542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16873257	0.89[JPT][hapmap]
rs17422760	0.89[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs17424547	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1748231	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1748233	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs1748234	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1748235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1748237	0.82[AMR][1000 genomes]
rs1748238	0.89[JPT][hapmap]
rs1748240	0.89[JPT][hapmap]
rs1748242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1797145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1797147	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1886345	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1937046	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1937047	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1971482	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1980265	0.90[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs2057552	0.89[JPT][hapmap]
rs2057553	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs2093901	0.88[ASN][1000 genomes]
rs2093903	0.88[ASN][1000 genomes]
rs2186062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2396369	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs2396371	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2396372	0.82[ASW][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs2396375	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2396380	0.99[ASN][1000 genomes]
rs2396425	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2815263	0.89[JPT][hapmap]
rs34152708	0.82[ASN][1000 genomes]
rs34251367	0.86[ASN][1000 genomes]
rs35134594	0.86[ASN][1000 genomes]
rs35687006	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs35811020	0.83[ASN][1000 genomes]
rs35817842	0.92[ASN][1000 genomes]
rs3778507	0.90[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs3799979	0.82[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap]
rs3799981	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3799984	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs3799986	0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs3799987	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs3920903	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4352679	0.83[ASN][1000 genomes]
rs4398713	0.92[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4412189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4512220	0.89[JPT][hapmap]
rs4521587	0.89[JPT][hapmap]
rs4711807	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4711809	0.82[CHB][hapmap]
rs4714828	0.82[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap]
rs4714830	0.82[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.80[MEX][hapmap];0.84[MKK][hapmap];0.81[TSI][hapmap]
rs4714834	0.80[CHD][hapmap];0.89[JPT][hapmap]
rs4714836	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4714838	0.86[ASN][1000 genomes]
rs4714845	0.83[ASN][1000 genomes]
rs4714847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4714848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs494982	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs538801	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs56138724	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608941	0.82[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap]
rs636845	0.90[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs6458415	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6458418	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6458419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6458420	0.89[ASN][1000 genomes]
rs6458423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6458425	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6458427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6458428	0.88[ASN][1000 genomes]
rs6458430	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6458435	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs6899378	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6899763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6899845	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6901786	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6905396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6910974	0.92[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6917352	0.89[CHD][hapmap];0.89[JPT][hapmap]
rs6919161	0.89[JPT][hapmap]
rs6919847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6922660	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6922772	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6923436	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6925017	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs6925467	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6933553	0.92[ASN][1000 genomes]
rs6936475	0.89[JPT][hapmap]
rs6937317	0.85[ASN][1000 genomes]
rs6938316	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6941169	0.87[ASN][1000 genomes]
rs7451423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7738526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7739928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7740542	0.89[JPT][hapmap]
rs7742360	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7743116	0.83[ASN][1000 genomes]
rs7745506	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7749865	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7750380	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7754378	0.90[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs7758031	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7760342	0.84[CEU][hapmap]
rs7763421	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7763450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7763973	0.92[ASN][1000 genomes]
rs7764102	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7767025	0.83[AMR][1000 genomes]
rs7775717	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs927658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9296450	0.80[CHD][hapmap];0.84[JPT][hapmap]
rs9296453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9296455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9349309	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9349313	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9349315	0.89[ASN][1000 genomes]
rs9357464	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9357469	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9357470	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9357478	0.86[ASN][1000 genomes]
rs9357480	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9367211	0.84[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap]
rs9367214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9369529	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9369530	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9369533	0.99[ASN][1000 genomes]
rs9369534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9369549	0.89[JPT][hapmap]
rs9381361	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9381364	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9381365	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9381366	0.89[ASN][1000 genomes]
rs9381373	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9395058	0.80[EUR][1000 genomes]
rs9395063	0.92[CEU][hapmap];0.85[CHB][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9395066	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs9395079	0.85[ASN][1000 genomes]
rs9395081	0.89[JPT][hapmap]
rs9395086	0.85[ASN][1000 genomes]
rs9395088	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9463076	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9463081	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9472407	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9472409	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs9472414	0.89[JPT][hapmap]
rs9472416	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs9472442	0.89[JPT][hapmap]
rs9472451	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9472453	0.84[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs964452	0.84[CHB][hapmap];0.84[JPT][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs969211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs976699	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs988147	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758051	chr6:44879791-45056758	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2759423	chr6:44879791-45056758	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885862	chr6:44890760-45083966	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv885863	chr6:44890760-45083966	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv603008	chr6:44958372-45081821	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2762589	chr6:44982992-45044580	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1026728	chr6:45001948-45126730	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv538213	chr6:45001948-45126730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv885865	chr6:45012223-45102025	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs1411148	C6orf226	cis	cerebellum	SCAN
rs1411148	CD2AP	cis	parietal	SCAN
rs1411148	SUPT3H	cis	multi-tissue	Pritchard
rs1411148	SUPT3H	cis	parietal	SCAN
rs1411148	SUPT3H	cis	cerebellum	SCAN
rs1411148	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL
rs1411148	SUPT3H	cis	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45039800-45044200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:45039800-45044600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:45040600-45044600	Enhancers	NH-A	brain
4	chr6:45040800-45044000	Enhancers	Osteobl	bone
5	chr6:45041000-45044200	Enhancers	HUVEC	blood vessel
6	chr6:45041400-45044000	Enhancers	NHEK	skin
7	chr6:45041400-45044600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:45041600-45044600	Enhancers	NHDF-Ad	bronchial
9	chr6:45042400-45044000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:45042600-45044200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:45042600-45045800	Weak transcription	Dnd41	blood
12	chr6:45042800-45044200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:45043000-45046000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:45043200-45044000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:45043600-45044600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:45043600-45047000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links