Variant report

Variant	rs2057552
Chromosome Location	chr6:45214185-45214186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45213921..45216260-chr6:45230809..45233624,3	K562	blood:
2	chr6:45200553..45203015-chr6:45211837..45214861,3	K562	blood:

Extended variants
information (count: 272 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:265)

rs_ID	r²[population]
rs1080415	0.80[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs10807318	0.82[ASN][1000 genomes]
rs10807319	0.86[ASN][1000 genomes]
rs10807320	0.84[ASN][1000 genomes]
rs10948222	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs10948225	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10948227	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10948228	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10948230	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10948231	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11964325	0.89[JPT][hapmap]
rs11966936	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs12205071	0.89[JPT][hapmap]
rs12205274	0.80[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs12208023	0.89[JPT][hapmap]
rs12208924	0.89[JPT][hapmap]
rs12524270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12525603	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12525950	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12526462	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12526484	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12526649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12526807	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12527586	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12527743	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528762	0.81[AMR][1000 genomes]
rs12529295	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12529490	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs12529907	1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12529946	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs12529990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12530207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12660412	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12662272	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12662664	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12662685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12663469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1284955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1284960	0.83[YRI][hapmap]
rs1284961	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1284962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1284964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1284965	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1284966	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1284967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1284969	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1284972	0.89[JPT][hapmap]
rs1284979	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1284986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1284987	0.89[JPT][hapmap]
rs1284988	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1284989	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1284990	0.85[YRI][hapmap]
rs1284992	0.89[JPT][hapmap]
rs1284993	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1284995	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1284999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1285000	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1285002	0.85[YRI][hapmap]
rs1285003	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1285004	0.89[JPT][hapmap]
rs1285005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285006	0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1285008	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1285010	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285013	0.88[JPT][hapmap]
rs1285014	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1285018	0.85[YRI][hapmap]
rs1285019	0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1285020	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1285021	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285024	0.85[YRI][hapmap]
rs1285025	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1285026	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1285027	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1285028	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1285031	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1285033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1290386	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1304168	0.84[ASN][1000 genomes]
rs13198471	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13201942	0.81[AMR][1000 genomes]
rs13205113	0.81[AMR][1000 genomes]
rs13211006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1324530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1324532	0.89[JPT][hapmap]
rs1324535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1324540	0.85[ASN][1000 genomes]
rs1406848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1411148	0.89[JPT][hapmap]
rs1581777	0.86[ASN][1000 genomes]
rs1629542	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs16873257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16873345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16873348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16873364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16873366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16873373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16873379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1748231	0.89[JPT][hapmap]
rs1748233	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1748234	0.89[JPT][hapmap]
rs1748235	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1748236	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1748238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1748240	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1748242	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1797145	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1797148	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1797149	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1797156	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1797159	0.83[ASN][1000 genomes]
rs1852985	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1852986	0.89[JPT][hapmap]
rs1853652	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1886345	0.94[JPT][hapmap]
rs1937046	0.89[JPT][hapmap]
rs2024786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2024787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2057553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2093901	0.82[ASN][1000 genomes]
rs2093903	0.82[ASN][1000 genomes]
rs2186062	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs2295295	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2295296	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2396381	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2396425	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2396426	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2763134	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28360524	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34152708	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34167737	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34251367	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34677014	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35134594	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35565233	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35811020	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3763190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3923353	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs4072928	0.89[JPT][hapmap]
rs4236086	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4312985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4339452	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4341001	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4352679	0.84[ASN][1000 genomes]
rs4373351	0.87[JPT][hapmap]
rs4401652	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4412189	0.89[JPT][hapmap]
rs4441951	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4446571	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs4521586	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4521587	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4590263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4711813	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4711814	0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4714836	0.89[JPT][hapmap]
rs4714838	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4714842	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4714845	0.84[ASN][1000 genomes]
rs4714846	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4714847	0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4714848	0.80[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4714850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4714853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55959525	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56175185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56243649	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58100797	0.82[ASN][1000 genomes]
rs59983488	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60346641	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60826731	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6458419	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs6458423	0.89[JPT][hapmap]
rs6458425	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6458427	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6458428	0.82[ASN][1000 genomes]
rs6458429	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6458430	0.82[ASN][1000 genomes]
rs6458432	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458433	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458434	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6458435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6899378	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs6899763	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs6899845	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs6901161	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901786	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6905396	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6905959	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6909856	0.85[YRI][hapmap]
rs6917352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6917594	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919847	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs6922660	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs6922772	0.89[JPT][hapmap]
rs6926638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6928753	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs6932926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6934594	0.89[JPT][hapmap]
rs6935969	1.00[YRI][hapmap]
rs6936475	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937317	0.86[ASN][1000 genomes]
rs6938177	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs6938316	0.82[ASN][1000 genomes]
rs6938592	0.86[ASN][1000 genomes]
rs6940983	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6941169	0.85[ASN][1000 genomes]
rs717987	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73449282	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73735337	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73735338	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73735354	0.87[ASN][1000 genomes]
rs73735357	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73735369	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73735378	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7451423	0.80[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7738526	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs7739928	0.94[JPT][hapmap]
rs7740542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7745506	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7757282	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs7757676	1.00[YRI][hapmap]
rs7760112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7763450	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs7771402	1.00[YRI][hapmap]
rs912548	0.87[YRI][hapmap];0.92[AFR][1000 genomes]
rs927658	0.80[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs9296452	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9296453	0.80[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9296455	0.80[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs9349315	0.82[ASN][1000 genomes]
rs9357469	0.89[JPT][hapmap]
rs9357470	0.89[JPT][hapmap]
rs9357478	0.84[ASN][1000 genomes]
rs9357480	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9357484	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs9367214	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs9369549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369558	0.89[JPT][hapmap]
rs9381365	0.89[JPT][hapmap]
rs9381373	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs9395065	0.89[JPT][hapmap]
rs9395066	0.84[JPT][hapmap]
rs9395081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9395086	0.86[ASN][1000 genomes]
rs9395088	0.84[ASN][1000 genomes]
rs9395095	0.84[JPT][hapmap]
rs9463069	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9463070	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9463076	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9463081	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9472442	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9472451	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9472453	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs964452	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs967588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs969211	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs988147	0.89[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2763550	chr6:45186825-45275593	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2057552	SUPT3H	cis	Lymphoblastoid	GTEx
rs2057552	SUPT3H	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45208400-45218200	Weak transcription	Gastric	stomach
2	chr6:45210400-45217400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:45211400-45220200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:45212400-45214800	Weak transcription	Stomach Mucosa	stomach
5	chr6:45213800-45221200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links