Variant report

Variant	rs6458429
Chromosome Location	chr6:45185217-45185218
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10948225	0.82[AMR][1000 genomes]
rs10948227	0.82[AMR][1000 genomes]
rs10948228	0.82[AMR][1000 genomes]
rs12524270	0.85[AMR][1000 genomes]
rs12525603	0.82[AMR][1000 genomes]
rs12526484	0.82[AMR][1000 genomes]
rs12526807	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12527586	0.82[AMR][1000 genomes]
rs12527743	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12529295	0.82[AMR][1000 genomes]
rs12529907	0.82[AMR][1000 genomes]
rs12660412	0.82[AMR][1000 genomes]
rs12662272	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12662664	0.82[AMR][1000 genomes]
rs12662685	0.82[AMR][1000 genomes]
rs1284955	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1284962	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1284964	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1284966	0.81[ASN][1000 genomes]
rs1284967	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1284993	0.81[ASN][1000 genomes]
rs1285005	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285006	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285007	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1285008	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285009	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285010	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285011	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285020	0.80[ASN][1000 genomes]
rs1285021	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285025	0.85[AMR][1000 genomes]
rs1285027	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1285028	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285029	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285030	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1285031	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1285033	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1324530	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1324535	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16873257	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16873345	0.82[AMR][1000 genomes]
rs1748233	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1748236	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1748238	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1748240	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1797156	0.81[ASN][1000 genomes]
rs1797159	0.81[AMR][1000 genomes]
rs1853652	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2024787	0.82[AMR][1000 genomes]
rs2057552	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2057553	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2396381	0.81[ASN][1000 genomes]
rs2396426	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2763134	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2815263	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28360524	0.82[AMR][1000 genomes]
rs34167737	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34677014	0.81[AMR][1000 genomes]
rs4236086	0.85[AMR][1000 genomes]
rs4312985	0.85[AMR][1000 genomes]
rs4339452	0.87[AMR][1000 genomes]
rs4341001	0.85[AMR][1000 genomes]
rs4401652	0.82[AMR][1000 genomes]
rs4521586	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4521587	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4590263	0.82[AMR][1000 genomes]
rs4711813	0.85[AMR][1000 genomes]
rs4714842	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4714846	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4714850	0.82[AMR][1000 genomes]
rs55959525	0.87[AMR][1000 genomes]
rs56175185	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56243649	0.82[AMR][1000 genomes]
rs59983488	0.82[AMR][1000 genomes]
rs60346641	0.82[AMR][1000 genomes]
rs60826731	0.85[AMR][1000 genomes]
rs6458432	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6458433	0.82[ASN][1000 genomes]
rs6458434	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6458435	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6458440	0.82[AMR][1000 genomes]
rs6901161	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6905959	0.82[AMR][1000 genomes]
rs6917352	0.84[ASN][1000 genomes]
rs6917594	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6936475	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6940983	0.82[AMR][1000 genomes]
rs73449282	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73735337	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73735338	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73735357	0.82[AMR][1000 genomes]
rs73735369	0.82[AMR][1000 genomes]
rs73735378	0.81[AMR][1000 genomes]
rs7740542	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9296452	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9369549	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9395081	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9472442	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9472453	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs967588	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45182800-45186600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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