Variant report

Variant	rs1797159
Chromosome Location	chr6:45134122-45134123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45119653..45122627-chr6:45134013..45136661,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs12526807	0.82[ASN][1000 genomes]
rs12527743	0.83[ASN][1000 genomes]
rs12662272	0.82[ASN][1000 genomes]
rs1284955	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1284962	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1284964	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1284966	0.80[ASN][1000 genomes]
rs1284967	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1284979	0.80[ASN][1000 genomes]
rs1284989	0.80[ASN][1000 genomes]
rs1284993	0.82[ASN][1000 genomes]
rs1284999	0.80[ASN][1000 genomes]
rs1285003	0.80[ASN][1000 genomes]
rs1285005	0.82[ASN][1000 genomes]
rs1285006	0.82[ASN][1000 genomes]
rs1285007	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1285008	0.82[ASN][1000 genomes]
rs1285009	0.82[ASN][1000 genomes]
rs1285010	0.82[ASN][1000 genomes]
rs1285011	0.82[ASN][1000 genomes]
rs1285020	0.83[ASN][1000 genomes]
rs1285021	0.82[ASN][1000 genomes]
rs1285025	0.80[ASN][1000 genomes]
rs1285027	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1285028	0.82[ASN][1000 genomes]
rs1285029	0.82[ASN][1000 genomes]
rs1285030	0.82[ASN][1000 genomes]
rs1285031	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1285033	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1324530	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1324535	0.82[ASN][1000 genomes]
rs16873257	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1748233	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1748236	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1748238	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1748240	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1797147	0.81[ASN][1000 genomes]
rs1797148	0.82[ASN][1000 genomes]
rs1797149	0.82[ASN][1000 genomes]
rs1797156	0.82[ASN][1000 genomes]
rs1853652	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2057552	0.83[ASN][1000 genomes]
rs2057553	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2396381	0.82[ASN][1000 genomes]
rs2396426	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2763134	0.83[ASN][1000 genomes]
rs2815263	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34167737	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35811020	0.80[ASN][1000 genomes]
rs4521586	0.82[ASN][1000 genomes]
rs4521587	0.82[ASN][1000 genomes]
rs4714842	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4714846	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56175185	0.83[ASN][1000 genomes]
rs6458429	0.81[AMR][1000 genomes]
rs6458432	0.83[ASN][1000 genomes]
rs6458433	0.83[ASN][1000 genomes]
rs6458434	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6458435	0.83[ASN][1000 genomes]
rs6901161	0.83[ASN][1000 genomes]
rs6917352	0.85[ASN][1000 genomes]
rs6917594	0.82[ASN][1000 genomes]
rs6936475	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73449282	0.82[ASN][1000 genomes]
rs73735337	0.83[ASN][1000 genomes]
rs73735338	0.82[ASN][1000 genomes]
rs7740542	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9296452	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9369549	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9395081	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9463069	0.81[ASN][1000 genomes]
rs9463070	0.80[ASN][1000 genomes]
rs9472442	0.82[ASN][1000 genomes]
rs9472453	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023018	chr6:44925393-45152912	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538212	chr6:44925393-45152912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45132000-45135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:45132000-45141400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:45132200-45137600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:45132400-45137800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:45132600-45134400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:45132800-45136200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:45133000-45137800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:45133000-45143200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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